View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_96 (Length: 243)
Name: NF11928_low_96
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42763803 - 42764024
Alignment:
| Q |
1 |
tggctttattcaaattatcaatgatataggtatgggagcaagcatcttcccactttctaaccatgcttcatcccaatagggagtataactttaagcatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763803 |
tggctttattcaaattatcaatgatataggtatgggagcaagcatcttcccactttctaaccatgcttcatcccaatagggagtataactttaagcatcc |
42763902 |
T |
|
| Q |
101 |
tggtatgcgaggtacacattttttatccttttataatattgtcttttgttgtaagacattatggaaagaaattttgccccacacttaataaacactaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763903 |
tggtatgcgaggtacacattttttatccttttataatattgtcttttgttgtaagacattatggaaagaaattttgccccacacttaataaacactaaaa |
42764002 |
T |
|
| Q |
201 |
ttgtatcaatgaaattgttatg |
222 |
Q |
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|||||||||||||||||||||| |
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|
| T |
42764003 |
ttgtatcaatgaaattgttatg |
42764024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42806561 - 42806782
Alignment:
| Q |
1 |
tggctttattcaaattatcaatgatataggtatgggagcaagcatcttcccactttctaaccatgcttcatcccaatagggagtataactttaagcatcc |
100 |
Q |
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|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42806561 |
tggctttattcaaattatc---gatataggtctgggagcaagcatcttcccactttctaaccatgcttcttcccaatagggagtataactttaagcatcc |
42806657 |
T |
|
| Q |
101 |
tggtatgcgaggtacacattttttatccttttataatattgtcttttgttgtaagacattatggaaagaaattttgccccacacttaataaacactaaaa |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
42806658 |
tggtatgagaggtacacattttttatccttttataatattgtcttttgttgtaagacataatggaaagaaattttgccccacacgtaataaacactaaaa |
42806757 |
T |
|
| Q |
201 |
ttgtatcaatgaaattgttatgtac |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
42806758 |
ttgtatcaatgaaattgttatgtac |
42806782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 33049780 - 33050001
Alignment:
| Q |
1 |
tggctttattcaaattatcaatgatataggtatgggagcaagcatcttcccactttctaaccatgcttcatcccaatagggagtataactttaagcatcc |
100 |
Q |
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|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33049780 |
tggctttattcaaattatc---gatataggtctgggagcaagcatcttcccactttctaaccatgcttcttcccaatagggagtataactttaagcatcc |
33049876 |
T |
|
| Q |
101 |
tggtatgcgaggtacacattttttatccttttataatattgtcttttgttgtaagacattatggaaagaaattttgccccacacttaataaacactaaaa |
200 |
Q |
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|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33049877 |
tggtatgtgaggtacacattttttatccttttatattattgtcttttgttgtaagacattatggaaagaaattttgccccacacgtaataaacactaaaa |
33049976 |
T |
|
| Q |
201 |
ttgtatcaatgaaattgttatgtac |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
33049977 |
ttgtatcaatgaaattgttatgtac |
33050001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26429891 - 26429814
Alignment:
| Q |
1 |
tggctttattcaaattatcaatgatataggtatgggagcaagcatcttcccactttctaaccatgcttcatcccaata |
78 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | |||||||| || | ||||||||||||| ||| ||| |||||||| |
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| T |
26429891 |
tggctttattcaaattaacaatggtatagcccttggagcaagtatatccccactttctaactatggttcttcccaata |
26429814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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