View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11929_high_15 (Length: 304)

Name: NF11929_high_15
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11929_high_15
NF11929_high_15
[»] chr8 (32 HSPs)
chr8 (1-142)||(4162701-4162842)
chr8 (183-287)||(4162883-4162987)
chr8 (185-287)||(4144532-4144634)
chr8 (183-276)||(4152530-4152623)
chr8 (1-133)||(6599205-6599334)
chr8 (1-133)||(6674658-6674787)
chr8 (1-133)||(4731894-4732027)
chr8 (1-132)||(30143576-30143708)
chr8 (1-130)||(41366420-41366549)
chr8 (205-276)||(4123205-4123276)
chr8 (1-132)||(15213022-15213155)
chr8 (7-133)||(12702430-12702559)
chr8 (1-133)||(19491502-19491634)
chr8 (1-132)||(1345176-1345307)
chr8 (1-128)||(3303474-3303602)
chr8 (3-132)||(8154020-8154147)
chr8 (61-132)||(5689563-5689635)
chr8 (1-132)||(40321312-40321442)
chr8 (1-132)||(8965492-8965620)
chr8 (1-132)||(4743027-4743150)
chr8 (77-133)||(7493299-7493353)
chr8 (1-133)||(18105875-18106007)
chr8 (4-134)||(32901987-32902115)
chr8 (183-271)||(4133725-4133813)
chr8 (7-133)||(43036665-43036792)
chr8 (1-135)||(1746015-1746151)
chr8 (61-132)||(4734002-4734075)
chr8 (1-132)||(33352386-33352518)
chr8 (1-59)||(42498431-42498493)
chr8 (1-41)||(18142050-18142090)
chr8 (1-99)||(34254165-34254263)
chr8 (1-133)||(44304091-44304225)
[»] chr2 (27 HSPs)
chr2 (1-133)||(36987874-36988007)
chr2 (1-132)||(39285071-39285202)
chr2 (1-134)||(34139571-34139704)
chr2 (1-133)||(723546-723678)
chr2 (1-134)||(11049786-11049914)
chr2 (1-132)||(24885822-24885953)
chr2 (9-132)||(2334218-2334341)
chr2 (1-132)||(42362582-42362713)
chr2 (1-133)||(38312476-38312608)
chr2 (1-133)||(14633627-14633759)
chr2 (3-133)||(17057168-17057299)
chr2 (3-133)||(17085151-17085282)
chr2 (1-132)||(33162254-33162386)
chr2 (1-114)||(5723074-5723188)
chr2 (1-132)||(6594804-6594936)
chr2 (1-132)||(11151395-11151527)
chr2 (73-130)||(13122067-13122124)
chr2 (1-132)||(29868105-29868237)
chr2 (28-132)||(17489958-17490060)
chr2 (1-133)||(14202223-14202355)
chr2 (87-132)||(26354131-26354176)
chr2 (1-130)||(11067537-11067667)
chr2 (61-132)||(36773854-36773926)
chr2 (1-132)||(36205464-36205597)
chr2 (77-133)||(11690799-11690857)
chr2 (1-133)||(2838182-2838314)
chr2 (1-41)||(36191152-36191191)
[»] chr1 (27 HSPs)
chr1 (1-134)||(8550582-8550716)
chr1 (1-134)||(44455396-44455530)
chr1 (1-133)||(23555070-23555202)
chr1 (1-132)||(833970-834101)
chr1 (11-132)||(927785-927901)
chr1 (1-134)||(50166978-50167111)
chr1 (1-132)||(1833745-1833876)
chr1 (1-133)||(3846920-3847055)
chr1 (1-134)||(28220024-28220158)
chr1 (1-133)||(31659474-31659607)
chr1 (1-133)||(28223220-28223353)
chr1 (1-132)||(13137780-13137912)
chr1 (1-133)||(40122000-40122132)
chr1 (1-133)||(41361147-41361279)
chr1 (1-132)||(196710-196841)
chr1 (1-132)||(28265359-28265490)
chr1 (1-133)||(10925458-10925591)
chr1 (1-133)||(49918586-49918719)
chr1 (1-132)||(45644158-45644290)
chr1 (1-133)||(37559663-37559798)
chr1 (77-132)||(37503362-37503418)
chr1 (1-130)||(13659153-13659273)
chr1 (98-132)||(37282498-37282532)
chr1 (60-128)||(3189639-3189708)
chr1 (60-128)||(3198456-3198525)
chr1 (60-128)||(3207295-3207364)
chr1 (1-99)||(3157101-3157199)
[»] chr4 (23 HSPs)
chr4 (1-133)||(12743727-12743857)
chr4 (1-133)||(4588191-4588321)
chr4 (3-130)||(56178438-56178566)
chr4 (1-133)||(12739352-12739482)
chr4 (1-132)||(26175436-26175568)
chr4 (1-129)||(47038219-47038347)
chr4 (1-132)||(48143284-48143417)
chr4 (3-132)||(6541987-6542113)
chr4 (1-133)||(5872054-5872184)
chr4 (1-132)||(48893443-48893574)
chr4 (1-133)||(34570213-34570346)
chr4 (1-134)||(52082461-52082595)
chr4 (11-132)||(36463196-36463317)
chr4 (1-132)||(54199708-54199840)
chr4 (1-130)||(52467159-52467290)
chr4 (1-133)||(9927257-9927391)
chr4 (3-132)||(31474385-31474512)
chr4 (5-133)||(52095161-52095290)
chr4 (61-134)||(45686985-45687059)
chr4 (1-133)||(46147194-46147327)
chr4 (3-130)||(37229531-37229656)
chr4 (1-59)||(5429915-5429977)
chr4 (1-41)||(36994755-36994795)
[»] chr3 (22 HSPs)
chr3 (1-133)||(22834806-22834938)
chr3 (1-132)||(21350811-21350939)
chr3 (1-134)||(44700282-44700415)
chr3 (1-134)||(51351939-51352070)
chr3 (1-133)||(29813297-29813431)
chr3 (61-132)||(2074883-2074954)
chr3 (1-133)||(40734733-40734866)
chr3 (5-132)||(27305519-27305643)
chr3 (1-133)||(9635922-9636056)
chr3 (1-133)||(51399050-51399183)
chr3 (1-132)||(9666270-9666402)
chr3 (4-134)||(40735621-40735752)
chr3 (1-132)||(9581519-9581652)
chr3 (62-135)||(761141-761214)
chr3 (1-132)||(37408695-37408827)
chr3 (82-134)||(5236255-5236308)
chr3 (61-133)||(32891386-32891459)
chr3 (9-134)||(29196187-29196314)
chr3 (1-132)||(9634621-9634753)
chr3 (3-133)||(19683686-19683818)
chr3 (1-133)||(23391711-23391844)
chr3 (1-133)||(7762502-7762636)
[»] chr7 (29 HSPs)
chr7 (1-133)||(14069632-14069765)
chr7 (1-133)||(14379660-14379793)
chr7 (1-132)||(23344205-23344332)
chr7 (1-133)||(23555277-23555411)
chr7 (1-134)||(41648812-41648945)
chr7 (1-134)||(27348053-27348187)
chr7 (1-132)||(31105200-31105328)
chr7 (1-135)||(23564868-23564997)
chr7 (2-132)||(25616092-25616223)
chr7 (1-132)||(47675936-47676068)
chr7 (1-131)||(48489667-48489798)
chr7 (1-133)||(4586397-4586531)
chr7 (1-133)||(18126882-18127016)
chr7 (65-132)||(38671025-38671093)
chr7 (1-125)||(495795-495919)
chr7 (1-132)||(1113889-1114021)
chr7 (1-132)||(19502415-19502547)
chr7 (1-132)||(30024562-30024688)
chr7 (1-132)||(31519127-31519258)
chr7 (1-128)||(43864480-43864609)
chr7 (1-133)||(36146211-36146344)
chr7 (1-132)||(41317238-41317370)
chr7 (4-117)||(35854155-35854269)
chr7 (1-132)||(26417552-26417685)
chr7 (1-117)||(29991289-29991406)
chr7 (1-134)||(47673742-47673876)
chr7 (1-132)||(48491812-48491944)
chr7 (74-133)||(3047062-3047120)
chr7 (79-133)||(6430441-6430497)
[»] chr5 (13 HSPs)
chr5 (1-133)||(42927129-42927261)
chr5 (1-134)||(5887233-5887366)
chr5 (1-134)||(31183210-31183343)
chr5 (1-133)||(30682721-30682855)
chr5 (63-132)||(16649635-16649705)
chr5 (1-125)||(42428237-42428362)
chr5 (19-133)||(534013-534128)
chr5 (1-130)||(538257-538387)
chr5 (1-131)||(13239988-13240118)
chr5 (1-132)||(39468348-39468481)
chr5 (1-132)||(8565748-8565882)
chr5 (62-132)||(33831975-33832046)
chr5 (79-141)||(40147555-40147619)
[»] chr6 (11 HSPs)
chr6 (1-133)||(14521477-14521613)
chr6 (1-132)||(26954091-26954222)
chr6 (1-132)||(28137211-28137342)
chr6 (1-134)||(5408867-5409002)
chr6 (1-134)||(5413192-5413327)
chr6 (1-99)||(9182865-9182963)
chr6 (1-132)||(5406002-5406132)
chr6 (1-132)||(5410327-5410457)
chr6 (78-132)||(16569333-16569389)
chr6 (77-133)||(257244-257300)
chr6 (79-133)||(602902-602958)
[»] scaffold0066 (1 HSPs)
scaffold0066 (1-133)||(20215-20347)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-130)||(148914-149034)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4162701 - 4162842
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4162701 tgattcctagattagatctaggttttattattgttgttgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 4162800  T
Q  101 attggtatgattttgagtccgaattcacaacaaagctattat 142  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  4162801 actggtatgattttgagtccgaattcacaacaaagctattat 4162842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 4162883 - 4162987
Alignment:
Q  183 gatacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaatacatacaacgtata 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4162883 gatacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaatacatacaacgtata 4162982  T
Q  283 aaagg 287  Q
    |||||    
T  4162983 aaagg 4162987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 4144532 - 4144634
Alignment:
Q  185 tacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaatacatacaacgtataaa 284  Q
    |||| |||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |    
T  4144532 taccaagttctgccggcacacgaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacatacaacctataga 4144631  T
Q  285 agg 287  Q
    |||    
T  4144632 agg 4144634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 4152530 - 4152623
Alignment:
Q  183 gatacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaatacatacaa 276  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| | | ||||||||||||||    
T  4152530 gatacctagttctgccggcacacgaacgaagagatcaactccgccattaggaaatttctgcaaatcaattaactctccagtccaatacatacaa 4152623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 6599205 - 6599334
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||||||    ||||||||| | ||| ||||||||  |||||||| ||||     
T  6599205 tgattactagattagatctaggtgttgttattattgttgtttgtgttcactttgat----attggttactactttcctttgctctacacatcatagtttg 6599300  T
Q  100 tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||||||| ||||||||||||||||||||||||||    
T  6599301 tattggtgtgattttgagtccgaattcacaacaa 6599334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 6674658 - 6674787
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||||||    ||||||||| | ||| ||||||||  |||||||| ||||     
T  6674658 tgattactagattagatctaggtgttgttattattgttgtttgtgttcactttgat----attggttactactttcctttgctctacacatcatagtttg 6674753  T
Q  100 tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||||||| ||||||||||||||||||||||||||    
T  6674754 tattggtgtgattttgagtccgaattcacaacaa 6674787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4731894 - 4732027
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||||||||| | ||||||||||     |||||| | ||| ||||||||| ||||||||||    
T  4731894 tgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatc----ggttactactttcctttgctccacacatcattg 4731989  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||| ||||||||||| ||||||||||||||    
T  4731990 tttgtattggtgtgattttgagttcgaattcacaacaa 4732027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30143576 - 30143708
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  30143576 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 30143671  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||| ||||||| |||||||||||| ||||||||||||    
T  30143672 tttgtattggtgtgattttgagtctgaattcacaaca 30143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 41366549 - 41366420
Alignment:
Q  1 tgattcctagattagatctaggttttgttattatt---attgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||| ||||||||||||| |||||||| ||   |||| ||||| |||||||||||||    |||||| | ||| ||||||||| |||||||| ||    
T  41366549 tgattcctatattagatctaggtgttgttattgttgttattgcttgtgtttactttgatatt----ggttactactttcctttgctccacacatcatagt 41366454  T
Q  98 tt-tattggtatgattttgagtccgaattcacaa 130  Q
    || ||||||| |||||||||||||||||||||||    
T  41366453 ttgtattggtgtgattttgagtccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 4123205 - 4123276
Alignment:
Q  205 cgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaatacatacaa 276  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||||||||| | | ||||||||||||||    
T  4123205 cgaatgaagagatcaactccaccataaggaaatttctgcaaatcaattaactctccagtccaatacatacaa 4123276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 15213022 - 15213155
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||| ||||  |||||||    ||||||||||||| | |||||||||||    |||||| | ||| ||||||||| |||||||| |    
T  15213022 tgattcctagattagatcaaggtgctgttattgttgattattgtttgtgttcactttgatatt----ggttactactttcctttgctccacacatcatag 15213117  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    ||| ||||||| ||| ||||||||||||||||||||||    
T  15213118 tttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 12702559 - 12702430
Alignment:
Q  7 ctagattagatctaggttttgttattattattgtt------tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||||||||||||||| | ||| |||||||||||      |||| |||||||||||||    |||||| | ||| ||||||||| |||||||| ||||     
T  12702559 ctagattagatctaggtgtcgttgttattattgttgttgcttgtgtttactttgatatt----ggttactactttcctttgctccacacatcatagtttg 12702464  T
Q  100 tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||||| | ||||||||||||||||||||||||||    
T  12702463 tattgatgtgattttgagtccgaattcacaacaa 12702430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 19491634 - 19491502
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||| ||||| |||||||| || |||||   |||| ||||||||||||| |||  |    | ||| ||||||||| |||||||| ||    
T  19491634 tgattcctagattagatataggtgttgttattgttgttgttacttgtgtttactttgatattgattaat----actttcctttgctccacacatcatagt 19491539  T
Q  98 tttattggtatga-ttttgagtccgaattcacaacaa 133  Q
    |||||||||  || |||||||||||||||||||||||    
T  19491538 tttattggttagagttttgagtccgaattcacaacaa 19491502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 1345307 - 1345176
Alignment:
Q  1 tgattcctagattagatctaggttttgttatta---ttattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| || ||||||   || ||||||||| ||||||||||    ||||||||| | ||| ||||||||| || || |||||    
T  1345307 tgattactagattagatctaggtgttattattattgttgttgtttgtgtttactttgat----attggttactactttcctttgctccacagattattgt 1345212  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || |||| || ||||||||| |||||||||||||||    
T  1345211 ttgtatttgtgtgattttgaatccgaattcacaaca 1345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3303602 - 3303474
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||| | ||||||||| |||||   |||| ||  |||||||||    |||||||| ||| ||||||||| |||||||| ||    
T  3303602 tgattcctagattagatctaggtgtagttattattgttgttgcttgtgtttgttttgatatt----ggttaccactttcctttgctccacacatcatagt 3303507  T
Q  98 tt-tattggtatga-ttttgagtccgaattcac 128  Q
    || ||||||| |||  |||||||||||||||||    
T  3303506 ttgtattggtgtgagatttgagtccgaattcac 3303474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 8154020 - 8154147
Alignment:
Q  3 attcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt 99  Q
    |||||||||||| |||||||||| ||||||||| |||||   |||| ||||||||||||| |||    || | ||| |||| || | |||||||| ||||    
T  8154020 attcctagattacatctaggttt-gttattattgttgttgcttgtggttactttgatattgatt----actactttcctttacttcacacatcatagttt 8154114  T
Q  100 tattggtatgattttgagtccgaattcacaaca 132  Q
    |||| || |||||||||| ||||||||||||||    
T  8154115 tattagtgtgattttgagcccgaattcacaaca 8154147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 5689563 - 5689635
Alignment:
Q  61 attggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||||||||| | ||| ||||||||| |||||||| |||| ||||||| |||||||||||| ||||||||||||    
T  5689563 attggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 40321312 - 40321442
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| ||||||||||||| ||||    | | ||| ||||||||| || ||||| ||    
T  40321312 tgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttgatattgattg----ctactttcctttgctccacatatcatagt 40321407  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || |||| || |||||||||||| ||||||||||||    
T  40321408 ttgtatt-gtgtgattttgagtcggaattcacaaca 40321442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8965620 - 8965492
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    |||||||||||||| |||||||||| |||||| || |||||   |||| |||||||||||||    |||||| |  || ||| ||||| | |||||| ||    
T  8965620 tgattcctagattaaatctaggttt-gttattgttgttgttgcttgtggttactttgatatt----ggttactacgttcctt-gctccacgcatcatagt 8965527  T
Q  98 tttattggtatgattttgagtccgaattcacaaca 132  Q
    ||||||||| ||||||||||| |||||||||||||    
T  8965526 tttattggtgtgattttgagttcgaattcacaaca 8965492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4743150 - 4743027
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||||||||||||||||||||| ||||||||      | ||||| |||||||| ||||    |||||||| ||| ||||||||| ||||| || ||||     
T  4743150 tgattcctagattagatctaggtgttgttatt------gcttgtgtttactttggtatt----ggttaccactttcctttgctccacacattatagtttg 4743061  T
Q  100 tattggtatgat-tttgagtccgaattcacaaca 132  Q
    ||||||| |||  |||||||||||||||||||||    
T  4743060 tattggtgtgagatttgagtccgaattcacaaca 4743027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 7493299 - 7493353
Alignment:
Q  77 ctttgctcctcacatcattgttttattggtatgattttgagtccgaattcacaacaa 133  Q
    ||||||||| |||||||| ||||||||||| |||||||  |||||||||||||||||    
T  7493299 ctttgctccacacatcatagttttattggtgtgatttt--gtccgaattcacaacaa 7493353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 18106007 - 18105875
Alignment:
Q  1 tgattcctagattagatctaggttttgtta---ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    |||||||||||||||||||||||  |||||   || |||||| ||||| ||||||| ||    ||||||||| | ||| ||||||||  |||||||| ||    
T  18106007 tgattcctagattagatctaggtgatgttattgttgttattgcttgtgtttactttaat----attggttactactttcctttgctctacacatcatagt 18105912  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    || |||| || |||||||||||| ||||||| |||||    
T  18105911 ttgtattagtgtgattttgagtctgaattcataacaa 18105875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 32902115 - 32901987
Alignment:
Q  4 ttcctagattagatctaggttt--tgttattattattgtttgtgattactttgatattaattggttaccatttttcttt-gctcctcacatcattgtttt 100  Q
    ||||||||||||||||||||||  |||| || || ||||||| | || |||||||||||    ||||| | || ||||| ||||| ||||||   ||||     
T  32902115 ttcctagattagatctaggtttgttgttgttgttgttgtttgaggttgctttgatatta----gttactacttctcttttgctccacacatctaagttt- 32902021  T
Q  101 attggtatgattttgagtccgaattcacaacaaa 134  Q
    |||||| |||||||||||||||||||||||||||    
T  32902020 attggtctgattttgagtccgaattcacaacaaa 32901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 4133725 - 4133813
Alignment:
Q  183 gatacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaataca 271  Q
    |||||| |||||||| || ||||| ||||||||||||||||| | |  |||||| || |||||| ||||||| || | |||||||||||    
T  4133725 gataccaagttctgccgggacacggatgaagagatcaactcctccatgaggaaagttttgcaaaccaattaagtctccactccaataca 4133813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 43036665 - 43036792
Alignment:
Q  7 ctagattagatcta---ggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt-tat 102  Q
    ||||||||||||||   ||| |||||||| || ||| ||||| |||||||||    |||||||||| | ||| ||||||||| ||||||||| ||| |||    
T  43036665 ctagattagatctaggtggtgttgttattgttgttgcttgtgtttactttga----aattggttactactttcctttgctccacacatcattttttgtat 43036760  T
Q  103 tggtatga-ttttgagtccgaattcacaacaa 133  Q
    |||| ||| |||||||||| |||||| |||||    
T  43036761 tggtgtgagttttgagtccaaattcataacaa 43036792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1746151 - 1746015
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||    | ||||||||| | ||| |||| |||| |||||||| |    
T  1746151 tgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttg----ttattggttactactttcctttactccacacatcatag 1746056  T
Q  97 tt-ttattggtatgattttgagtccg-aattcacaacaaag 135  Q
    ||  ||||||| |||||||||| ||| ||||||||||||||    
T  1746055 ttcgtattggtgtgattttgagaccgaaattcacaacaaag 1746015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 4734002 - 4734075
Alignment:
Q  61 attggttaccatttttctttgctcctcacatcattgtttt--attggtatgattttgagtccgaattcacaaca 132  Q
    ||||||||| | ||| ||||||||| |||||||||| |||  |||||| | ||||||| |||||||||||||||    
T  4734002 attggttactactttcctttgctccacacatcattggtttgtattggtgtaattttgaatccgaattcacaaca 4734075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33352386 - 33352518
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| ||||||||||| ||||| ||||||||    ||||||| ||||| | |||||||||||    |||||  | ||| ||||||||| || |||||      
T  33352386 tgatttctagattagatttaggtgttgttattgttgattattgcttgtgttcactttgatatt----ggttattactttcctttgctccacatatcataa 33352481  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||| ||||||| ||||||||||| |||||||||||||    
T  33352482 tttatattggtgtgattttgagtacgaattcacaaca 33352518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42498431 - 42498493
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatatt 59  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | |||||||||||    
T  42498431 tgattcctagattagatctaggtgttgttattgttaattattgcttgtgttcactttgatatt 42498493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18142050 - 18142090
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt 41  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  18142050 tgattactagattagatgtaggtgttgttattattattgtt 18142090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34254263 - 34254165
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  34254263 tgattcctagattagatctaggtgctgttattgttgattattgcttgtgctcactttgat----attggttactactttcctttgctccacacatcatag 34254168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 44304091 - 44304225
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| ||||||||||||||||| ||||||||    ||||||| ||||| | ||||| ||    ||||||||| | ||| ||||||||| |||||||| |    
T  44304091 tgatttctagattagatctaggtgttgttattgttgattattgcttgtgctcactttaat----attggttactactttcctttgctccacacatcatag 44304186  T
Q  97 t-tttattggtatgattttgag-tccgaattcacaacaa 133  Q
    | | ||||||| ||||||||||  | |||||||||||||    
T  44304187 tatgtattggtgtgattttgagaacggaattcacaacaa 44304225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 36988007 - 36987874
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| |||||||||    |||||||||| | ||| ||||||||| |||||||| |    
T  36988007 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgtttactttga----aattggttactactttcctttgctccacacatcatag 36987912  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||| ||||||||||||||||||||||||||    
T  36987911 tttgtattggtgtgattttgagtccgaattcacaacaa 36987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 39285071 - 39285202
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   |||| |||||||||    |||||||||| | ||||||||||||| |||||||| ||    
T  39285071 tgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttga----aattggttactacttttctttgctccacacatcatagt 39285166  T
Q  98 tttattggtatga-ttttgagtccgaattcacaaca 132  Q
    | ||||||||||| |||| |||||||||||||||||    
T  39285167 tgtattggtatgagttttaagtccgaattcacaaca 39285202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 34139704 - 34139571
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   |||| | |||||||||||    |||||| | ||| ||||||||| |||||||| ||    
T  34139704 tgattactagattagatctaggtcttgttattattgttgttgcttgtgttcactttgatatt----ggttactactttcctttgctccacacatcatagt 34139609  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    || ||||||| |||||||||||||||||||||||||||    
T  34139608 ttgtattggtgtgattttgagtccgaattcacaacaaa 34139571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 723678 - 723546
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   |||| | |||||||||||    |||||| | ||| ||||||||| |||||||| ||    
T  723678 tgattactagattagatctaggtgttgttattattgttgttgattgtgttcactttgatatt----ggttactactttcctttgctccacacatcatagt 723583  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    || ||||||| ||||||||||||||||||||||||||    
T  723582 ttgtattggtgtgattttgagtccgaattcacaacaa 723546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 11049786 - 11049914
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    |||||||||||||||||||||||||  ||||| || ||| || ||||||||||||||||    |||||| | |||  |||||||| | |||||| |||||    
T  11049786 tgattcctagattagatctaggttta-ttattgttgttgcttatgattactttgatatt----ggttactactttcttttgctccacgcatcatagtttt 11049880  T
Q  101 attggtatgattttgagtccgaattcacaacaaa 134  Q
    |||||| |||||||| ||||||| ||||||||||    
T  11049881 attggtgtgattttgcgtccgaactcacaacaaa 11049914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 24885822 - 24885953
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||| ||| ||||   ||||| | ||||||||    ||||||||| ||||| ||||||| | |||||||| ||    
T  24885822 tgattactagattagatctaggtgttgttatcattgttgtttcttgtgttcactttgat----attggttactattttcctttgctacacacatcatagt 24885917  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| |||||||||||||||||||||||||    
T  24885918 ttgtattggtgtgattttgagtccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 2334341 - 2334218
Alignment:
Q  9 agattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt-tattg 104  Q
    ||||||||||||||| ||||||||||| |||||   |||| |||||||||    |||||||||| | ||| ||||||| | |||||||| |||| |||||    
T  2334341 agattagatctaggtgttgttattattgttgttgcttgtgtttactttga----aattggttactactttcctttgcttcacacatcatagtttgtattg 2334246  T
Q  105 gtatgattttgagtccgaattcacaaca 132  Q
    || |||||||||||| ||||||||||||    
T  2334245 gtgtgattttgagtctgaattcacaaca 2334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 42362582 - 42362713
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   || | | |||||||| ||    |||||| | ||| ||||||||| |||||||| ||    
T  42362582 tgattactagattagatctaggtgttgttattattgttgttgcttgagttcactttgatttt----ggttactactttcctttgctccacacatcatagt 42362677  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| |||||||||||||||||||||||||    
T  42362678 ttgtattggtgtgattttgagtccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 38312476 - 38312608
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||| ||| ||||| | ||||||||    ||||||||| | ||| ||||||||| ||||||||||    
T  38312476 tgattcctagattagatctaggtgctgttattgttgattgttgcttgtgttcactttgat----attggttactactttcctttgctccacacatcattg 38312571  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||| |||||||||||||||| |||||||||    
T  38312572 tttatattggtgtgattttgagtccgaa-tcacaacaa 38312608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14633759 - 14633627
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||| | ||| ||||||| | |||||||| ||    
T  14633759 tgattactagattagatctaggtgttgttattattgttgttgcttgtgttcactttgat----attggttactactttcctttgcttcacacatcatagt 14633664  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    || ||||||| |||||||||||| ||| |||||||||    
T  14633663 ttgtattggtgtgattttgagtctgaaatcacaacaa 14633627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 17057299 - 17057168
Alignment:
Q  3 attcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtt 98  Q
    |||||||||||||||||||||  |||||||    ||||||| ||||| | |||||||||||    |||||| | ||| ||||||||  ||||||||  ||    
T  17057299 attcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatatt----ggttactactttcctttgctctacacatcatattt 17057204  T
Q  99 t-tattggtatgattttgagtccgaattcacaacaa 133  Q
    | ||||||| ||||||||||||||||||||||||||    
T  17057203 tgtattggtgtgattttgagtccgaattcacaacaa 17057168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 17085282 - 17085151
Alignment:
Q  3 attcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtt 98  Q
    |||||||||||||||||||||  |||||||    ||||||| ||||| | |||||||||||    |||||| | ||| ||||||||  ||||||||  ||    
T  17085282 attcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatatt----ggttactactttcctttgctctacacatcatattt 17085187  T
Q  99 t-tattggtatgattttgagtccgaattcacaacaa 133  Q
    | ||||||| ||||||||||||||||||||||||||    
T  17085186 tgtattggtgtgattttgagtccgaattcacaacaa 17085151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 33162386 - 33162254
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgt-gattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   ||| | || ||||||||||    |||||| | ||| ||||||||| |||||||| |    
T  33162386 tgattactagattagatctaggtgttgttattattgttgttgcttgttgtttgctttgatatt----ggttactactttcctttgctccacacatcatag 33162291  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||| ||||| | |||||||||||||||||||||||||    
T  33162290 tttgtattgatgtgattttgagtccgaattcacaaca 33162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5723188 - 5723074
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||||||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  5723188 tgattcctagattagatctaggtgttgttattgttgattattgtttgtgctcactttgat----attggttactactttactttgctccacacatcatag 5723093  T
Q  97 ttt-tattggtatgatttt 114  Q
    ||| ||||||| |||||||    
T  5723092 tttgtattggtgtgatttt 5723074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6594936 - 6594804
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| |||||||||||||||||  |||||||    ||||||  ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  6594936 tgatttctagattagatctaggtgctgttattgttgattattacttgtgttcactttgat----attggttactactttactttgctccacacatcatag 6594841  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||| ||||||| ||||||||||||| |||||||||||    
T  6594840 tttgtattggtgtgattttgagtccaaattcacaaca 6594804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11151527 - 11151395
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||| | ||||||||||| |||||   |||| | ||||||||||| |||    || | |||| |||||||| |||||||| ||    
T  11151527 tgattactagattagatctagctgttgttattattgttgttgcttgtgttcactttgatattgatt----actacttttatttgctccacacatcatagt 11151432  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    || ||||||||||| |||||||| |||||||||||||    
T  11151431 ttgtattggtatgagttttgagttcgaattcacaaca 11151395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 13122067 - 13122124
Alignment:
Q  73 ttttctttgctcctcacatcattgttttattggtatgattttgagtccgaattcacaa 130  Q
    |||||||| |||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  13122067 ttttctttactccacacatcatagttttattggtgtgattttgtgtccgaattcacaa 13122124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 29868105 - 29868237
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| ||||||| |    ||||| |||| | ||||||||||||| |||||||| ||    
T  29868105 tgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttaa----aattgattactacttttctttgctccacacatcatagt 29868200  T
Q  98 tt-tattggtatg-attttgagtccgaattcacaaca 132  Q
    || ||||| | || | |||||||||||||||||||||    
T  29868201 ttgtattgctgtgaaatttgagtccgaattcacaaca 29868237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 17490060 - 17489958
Alignment:
Q  28 ttattattattgtttgtgattactttgatattaattggttaccatttttctttgctc--ctcacatcattgttttattggtatgattttgagtccgaatt 125  Q
    |||||||| ||||||||| ||||||||||    ||||||||| |||||   ||||||  | |||||||| |||||||||||   ||||||||||||||||    
T  17490060 ttattattgttgtttgtggttactttgat----attggttactattttctcttgctccacacacatcatagttttattggtgcaattttgagtccgaatt 17489965  T
Q  126 cacaaca 132  Q
    |||||||    
T  17489964 cacaaca 17489958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14202355 - 14202223
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||| | | ||||||||    |||| |||| | ||| |||| |||| || ||||| ||    
T  14202355 tgattactagattagatctaggtgttgttattattgttgttgcttgcgttcactttgat----attgattactactttcctttactccacatatcatagt 14202260  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    || | ||||||||||||||| ||||||||||||||||    
T  14202259 ttgtgttggtatgattttgactccgaattcacaacaa 14202223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 26354131 - 26354176
Alignment:
Q  87 cacatcattgttttattggtatgattttgagtccgaattcacaaca 132  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||    
T  26354131 cacatcatagttttattggtgtgattttgagtccgaattcataaca 26354176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 11067537 - 11067667
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| ||    
T  11067537 tgattactagattagatctaggtgttgttattattgttgttgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatagt 11067632  T
Q  98 ttta--ttggtatgattttgagtccgaattcacaa 130  Q
    || |  ||||| | |||||||| | ||||||||||    
T  11067633 ttgaatttggtgtaattttgaggctgaattcacaa 11067667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 36773854 - 36773926
Alignment:
Q  61 attggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||||||||| | |||  |||||||| |||||||| |||| ||||||| ||||||||| |||||||||||||||    
T  36773854 attggttactactttcatttgctccacacatcatagtttgtattggtgtgattttgaatccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 36205597 - 36205464
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||    | ||||||||| | ||| ||||||||| |||||||| |    
T  36205597 tgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttg----ttattggttactactttcctttgctccacacatcatag 36205502  T
Q  97 ttt-tattggtatgattttgagtcc-gaattcacaaca 132  Q
    ||| |||| || |||||||||| || ||||||||||||    
T  36205501 tttgtattagtgtgattttgagaccggaattcacaaca 36205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 11690799 - 11690857
Alignment:
Q  77 ctttgctcctcacatcattgttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||||||||| |||||||| |||| ||||||| ||| |||||||||||||||||||||||    
T  11690799 ctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 11690857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2838182 - 2838314
Alignment:
Q  1 tgattcctagattagatctaggttttgtta---ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    |||||||||||||| |||||||| ||||||   || || ||||||||| ||||||||||    | ||||||| | ||| |||| |||| |||||||  ||    
T  2838182 tgattcctagattatatctaggtgttgttattgttgttgttgtttgtgtttactttgat----agtggttactactttcctttactccacacatcaaagt 2838277  T
Q  98 tttattggtatga-ttttgagtccgaattcacaacaa 133  Q
     |||||||| ||| ||||| ||||||| |||||||||    
T  2838278 attattggtgtgagttttgtgtccgaactcacaacaa 2838314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36191191 - 36191152
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt 41  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  36191191 tgattcctagattagatctagg-tttgttattgttattgtt 36191152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 8550716 - 8550582
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | |||||||||||    |||||| | ||| ||||||||| |||||||| |    
T  8550716 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatatt----ggttactactttcctttgctccacacatcatag 8550621  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    ||| ||||||| |||||||||||||||||||||||||||    
T  8550620 tttgtattggtgtgattttgagtccgaattcacaacaaa 8550582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 44455396 - 44455530
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||||||||| | |||||||||||    |||||||| |||||||| |||| || ||||| |    
T  44455396 tgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatt----ggttaccacttttcttttctccacatatcatag 44455491  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    ||| ||||||| ||||||||||| |||||||||||||||    
T  44455492 tttgtattggtgtgattttgagtacgaattcacaacaaa 44455530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 23555202 - 23555070
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||| ||||||||||||| |||||||| || |||||   |||| ||||||||| ||| |||    || | ||||||||||||| |||||||||||    
T  23555202 tgattcctaaattagatctaggtgttgttattgttgttgttgcttgtgtttactttgacattgatt----actacttttctttgctccacacatcattgt 23555107  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    || |||||||  |||||||||||||||||||||||||    
T  23555106 ttctattggtgcgattttgagtccgaattcacaacaa 23555070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 834101 - 833970
Alignment:
Q  1 tgattcctagattagatctaggttttgttattatt---attgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||| ||||||||||| ||| |||||||| ||   |||| ||||| |||||||||||||    |||||| | ||| ||||||||| |||||||| ||    
T  834101 tgattcccagattagatcttggtgttgttattgttgttattgcttgtgtttactttgatatt----ggttactactttcctttgctccacacatcatagt 834006  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| |||||||||||||||||||||||||    
T  834005 ttgtattggtgtgattttgagtccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 927901 - 927785
Alignment:
Q  11 attagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttttattggtatga 110  Q
    |||||||||| |||||||| || || ||||||||||||||||||||    ||||||||||| ||  |||| |||| |||||||| | ||||||| | |||    
T  927901 attagatctaagttttgttgttgttgttgtttgtgattactttgat----attggttaccacttccctttactccacacatcatag-tttattgatgtga 927807  T
Q  111 ttttgagtccgaattcacaaca 132  Q
    ||||||||||||||||||||||    
T  927806 ttttgagtccgaattcacaaca 927785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 50167111 - 50166978
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| ||||||||||    ||||||||| | ||| ||||||||| |||||||| ||    
T  50167111 tgattactagattagatctaggtgttgttattattgttgtttcttgtgtttactttgat----attggttactactttcctttgctccacacatcatagt 50167016  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    || | ||||| ||||||||||| ||| |||||||||||    
T  50167015 ttgttttggtgtgattttgagttcgagttcacaacaaa 50166978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 1833745 - 1833876
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| |||||||||    |||||||||| | ||| |||| |||| || ||||| ||    
T  1833745 tgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttga----aattggttacgactttcctttactccacagatcatagt 1833840  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| |||| ||||||||||||||||||||    
T  1833841 ttgtattggtgtgatattgagtccgaattcacaaca 1833876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3847055 - 3846920
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt------tgtgattactttgatattaattggttaccatttttctttgctcctcacatcat 94  Q
    ||||| ||| ||||||||||||| |||||||||||||||||      |||| | |||||||||||    |||||| | ||| |||| |||| ||||||||    
T  3847055 tgattactatattagatctaggtgttgttattattattgttgttgcttgtgttcactttgatatt----ggttactactttcctttactccacacatcat 3846960  T
Q  95 tgttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
     |||| |||| |||||||||||||||||||||||||||||    
T  3846959 agtttgtattagtatgattttgagtccgaattcacaacaa 3846920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28220158 - 28220024
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   |||| | ||||| |||||    |||||| | ||||||||| ||| |||||||| ||    
T  28220158 tgattactagattagatctaggtgttgttattattgttgttgtttgtgttcactttaatatt----ggttactaattttctttgttccacacatcatagt 28220063  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaacaaa 134  Q
    || ||||||| ||| ||||||||||||||||||||||||    
T  28220062 ttgtattggtgtgagttttgagtccgaattcacaacaaa 28220024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 31659474 - 31659607
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcat-t 95  Q
    |||||||||||||||||| |||| ||||||||    ||||||| ||||| | | ||||||    ||||||||| | |||||||| |||| |||||||| |    
T  31659474 tgattcctagattagatcaaggtgttgttattgttgattattgcttgtgttcattttgat----attggttactacttttcttttctccacacatcatat 31659569  T
Q  96 gttttattggtatgattttgagtccgaattcacaacaa 133  Q
     || ||||||| ||||||||||||||||||||||||||    
T  31659570 tttatattggtgtgattttgagtccgaattcacaacaa 31659607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 28223353 - 28223220
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   |||| | |||||||||||    |||||| | |||  |||||||| |||||||| ||    
T  28223353 tgattactagattagatctaggtgttgttattattgttgttgcttgtgttcactttgatatt----ggttactactttcgtttgctccacacatcatagt 28223258  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    || ||||||| ||| |||||||||||||||||||||||    
T  28223257 ttgtattggtctgagttttgagtccgaattcacaacaa 28223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13137912 - 13137780
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| |||||||||    |||||||||| | ||| ||||||||| ||||||||  |    
T  13137912 tgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttga----aattggttactactttcctttgctccacacatcataat 13137817  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    || ||||||| ||| ||||||||||||||| ||||||    
T  13137816 ttgtattggtgtgagttttgagtccgaatttacaaca 13137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 40122132 - 40122000
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||| ||||||||||||| ||||||||||| |||||   |||| | |||| ||||||    |||||| | ||| ||||||||| | |||||| ||    
T  40122132 tgattactaaattagatctaggtgttgttattattgttgttgcttgtgttcacttagatatt----ggttactactttcctttgctccacgcatcatagt 40122037  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    || ||||||| ||||||||||||||||||||||||||    
T  40122036 ttgtattggtgtgattttgagtccgaattcacaacaa 40122000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41361147 - 41361279
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||| ||||| |||||||| || |||||   |||| ||||||||||||| |||  |    | ||| ||||||||| |||||||| ||    
T  41361147 tgattcctagattagatataggtgttgttattgttgttgttacttgtgtttactttgatattgattaat----actttcctttgctccacacatcatagt 41361242  T
Q  98 tttattggtatga-ttttgagtccgaattcacaacaa 133  Q
    |||||||||  || |||||||||||||||||||||||    
T  41361243 tttattggttagagttttgagtccgaattcacaacaa 41361279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 196841 - 196710
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||| ||||| ||||||||| ||||||||  |    
T  196841 tgattactagattagatgtaggtgttgttattattgttgttgcttgtgttcactttgat----attggttactattttcctttgctccacacatcataat 196746  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| ||| ||||||| |||||||||||||    
T  196745 ttgtattggtgtgaatttgagtacgaattcacaaca 196710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28265490 - 28265359
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||| | ||||||||||| ||||   ||||| | ||||||||    ||||| ||| ||||| |||| |||| |||||||| ||    
T  28265490 tgattactagattagatctagatgttgttattattgttgttgcttgtgttcactttgat----attggctactattttcctttactccacacatcatagt 28265395  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| ||||||||||||||||||| |||||    
T  28265394 ttgtattggtgtgattttgagtccgaattcccaaca 28265359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 10925458 - 10925591
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| ||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||||| |||    || | ||| ||||||||| |||| ||| |    
T  10925458 tgattactagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattgatt----actactttcctttgctccacacaacatag 10925553  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||| | ||||||||||||||||||||||||||    
T  10925554 tttgtattgttgtgattttgagtccgaattcacaacaa 10925591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 49918586 - 49918719
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||| |||||  |||||||    ||||||| ||||| | |||||||||||    |||||| | ||| ||||||||| |||||||| |    
T  49918586 tgattcctagattagatataggtgctgttattgttgattattgcttgtgttcactttgatatt----ggttactactttcctttgctccacacatcatag 49918681  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||| |||||||||||| ||||| |||||||    
T  49918682 tttgtattggtgtgattttgagtctgaatttacaacaa 49918719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 45644290 - 45644158
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgt-gattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| ||||||||||||||| | ||||||||||| |||||   ||| | || ||||||||||    |||||| | ||| ||||||||| |||||||| |    
T  45644290 tgattgctagattagatctagatgttgttattattgttgttgcttgttgtttgctttgatatt----ggttactactttcctttgctccacacatcatag 45644195  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||| |||| || |||||||||||||||||||||||||    
T  45644194 tttgtatttgtgtgattttgagtccgaattcacaaca 45644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37559798 - 37559663
Alignment:
Q  1 tgattcctagatt-agatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcatt 95  Q
    ||||||||||||| ||||||||||  |||||||    ||||||| ||||| | |||||||||||    |||||| | ||| |||||||||  |||||||     
T  37559798 tgattcctagatttagatctaggtgctgttattgttgattattgcttgtgttcactttgatatt----ggttactactttcctttgctccagacatcata 37559703  T
Q  96 gttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    |||| ||||||| ||| |||||||||||||||||||||||    
T  37559702 gtttatattggtgtgagttttgagtccgaattcacaacaa 37559663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 37503418 - 37503362
Alignment:
Q  77 ctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    |||| |||| |||||||| |||| ||||||| |||||||||||||||||||||||||    
T  37503418 ctttactccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13659273 - 13659153
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||||||||||||||| ||||| ||||||||      | ||||| |||||||||| ||    |||||| | ||| ||||||||| ||||| || ||||     
T  13659273 tgattcctagattagatttaggtgttgttatt------gcttgtgtttactttgatgtt----ggttactactttcctttgctccacacattatagtttg 13659184  T
Q  100 tattggtatgattttgagtccgaattcacaa 130  Q
    ||||| | |||||||||||||||||||||||    
T  13659183 tattgatgtgattttgagtccgaattcacaa 13659153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 37282532 - 37282498
Alignment:
Q  98 tttattggtatgattttgagtccgaattcacaaca 132  Q
    ||||||||| |||||||||||||||||||||||||    
T  37282532 tttattggtgtgattttgagtccgaattcacaaca 37282498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 3189639 - 3189708
Alignment:
Q  60 aattggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcac 128  Q
    |||||||||| | ||| |||||||||  ||||||| |||| ||||||| |||||||| ||||||||||||    
T  3189639 aattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3189708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 3198456 - 3198525
Alignment:
Q  60 aattggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcac 128  Q
    |||||||||| | ||| |||||||||  ||||||| |||| ||||||| |||||||| ||||||||||||    
T  3198456 aattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 3207295 - 3207364
Alignment:
Q  60 aattggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcac 128  Q
    |||||||||| | ||| |||||||||  ||||||| |||| ||||||| |||||||| ||||||||||||    
T  3207295 aattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3157101 - 3157199
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  3157101 tgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 3157196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 12743857 - 12743727
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||| ||||||||||||||||| ||||||||||| ||| ||||| |||||||||    |||||||||| | ||| ||||||||| |||| ||| ||||     
T  12743857 tgattactagattagatctaggtgttgttattattgttgcttgtgtttactttga----aattggttactactttcctttgctccacacaacatagtttg 12743762  T
Q  100 tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||||||| ||| |||||||||||||||||||||||    
T  12743761 tattggtgtgagttttgagtccgaattcacaacaa 12743727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4588191 - 4588321
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    ||||||||| ||||||| | |||||||||||| || |||||||||||| |||||||    | ||||||| ||||| ||||||||| |||||||  || ||    
T  4588191 tgattcctatattagatattggttttgttattgttgttgtttgtgattgctttgat----agtggttactattttcctttgctccacacatcaaagtatt 4588286  T
Q  101 attggtatga--ttttgagtccgaattcacaacaa 133  Q
    |||||| |||  |||||||||||||||||||||||    
T  4588287 attggtgtgagtttttgagtccgaattcacaacaa 4588321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 56178566 - 56178438
Alignment:
Q  3 attcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtt 98  Q
    ||||||||||||||||||||| ||||||||    ||||||| ||||| | |||||||||||    |||||| | ||| ||||||||| |||||||| |||    
T  56178566 attcctagattagatctaggtgttgttattgtttattattgcttgtgttcactttgatatt----ggttactactttcctttgctccacacatcatagtt 56178471  T
Q  99 t-tattggtatgattttgagtccgaattcacaa 130  Q
    | ||||||| |||||||||||||||||||||||    
T  56178470 tgtattggtgtgattttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 12739482 - 12739352
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||| || |||||||||||||| ||||||||||||||| ||||| |||||||||    |||||||||| | |||  ||| |||| |||||||| ||||     
T  12739482 tgattacttgattagatctaggtgttgttattattattgcttgtgtttactttga----aattggttactactttcttttactccacacatcatagtttg 12739387  T
Q  100 tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||||||| ||| |||||||||||||||||||||||    
T  12739386 tattggtgtgagttttgagtccgaattcacaacaa 12739352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26175568 - 26175436
Alignment:
Q  1 tgattcctagattagatctaggttttgttattat---tattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||   ||||| ||||| |||||||||    |||||||||| | ||| ||||||||| |||||||| ||    
T  26175568 tgattactagattagatctaggtgttgttattattgctattgcttgtgtttactttga----aattggttactactttcctttgctccacacatcatagt 26175473  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    || ||||||| ||| ||||||||||||||||||||||    
T  26175472 ttgtattggtgtgagttttgagtccgaattcacaaca 26175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 47038347 - 47038219
Alignment:
Q  1 tgattcctagattagatctaggttttgtta---ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||| ||||||   || |||||||||||| ||||||||||    ||||||||| | ||| ||||| ||| |||||||| ||    
T  47038347 tgattcctagattagatctaggtgttgttattgttgttattgtttgtgtttactttgat----attggttactactttcctttgttccacacatcatagt 47038252  T
Q  98 tt-tattggtatgattttgagtccgaattcaca 129  Q
    || ||||||| ||||||||||||| ||||||||    
T  47038251 ttgtattggtgtgattttgagtccaaattcaca 47038219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 48143284 - 48143417
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  48143284 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 48143379  T
Q  97 ttt-tattggtatgattttgagtcc-gaattcacaaca 132  Q
    ||| ||||||| ||||||||||||| ||||||||||||    
T  48143380 tttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 6542113 - 6541987
Alignment:
Q  3 attcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttttat 102  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    |||||  | ||| ||||||||| |||||||  || ||||    
T  6542113 attcctagattagatctaggttttgttattgttgttgcttgtgattactttgatatt----ggttattactttcctttgctccacacatcaaagtattat 6542018  T
Q  103 tggtatgattttga-gtccgaattcacaaca 132  Q
    || | ||| ||| | ||||||||||||||||    
T  6542017 tgatgtgagttttatgtccgaattcacaaca 6541987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 5872054 - 5872184
Alignment:
Q  1 tgattcctagattagatctaggttttgttatta---ttattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| |||||||||   || ||||||||| | ||||||||    ||||||||| | ||| ||||||||| ||||||| | |    
T  5872054 tgattactagattagatctaggtgttgttattattgttgttgtttgtgttcactttgat----attggttactactttcctttgctccacacatcagt-t 5872148  T
Q  98 tttattggtatgattttgagtccgaattcacaacaa 133  Q
    | ||||||| |||||||||||||| |||||||||||    
T  5872149 tgtattggtgtgattttgagtccggattcacaacaa 5872184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 48893574 - 48893443
Alignment:
Q  1 tgattcctagattagatctaggttttgttattatt---attgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    |||||| | ||||||||||||||  ||||||| ||   |||| ||||| |||||||||||||    |||||| | ||| ||||||||| |||||||| ||    
T  48893574 tgattcttggattagatctaggtgctgttattgttgttattgcttgtgtttactttgatatt----ggttactactttcctttgctccacacatcatagt 48893479  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| |||||||||||||||||||||||||    
T  48893478 ttgtattggtgtgattttgagtccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 34570346 - 34570213
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||| |||||||||||||||| ||||||||    ||||||||||||| | | ||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  34570346 tgattcttagattagatctaggtgttgttattgttgattattgtttgtgttcattttgat----attggttactactttcctttgctccacacatcatag 34570251  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||| ||||||||| ||||||||| ||||||    
T  34570250 tttatattggtgtgattttgaatccgaattcgcaacaa 34570213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 52082595 - 52082461
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||| ||||||||||  |||||||    ||||||| ||||| | |||||||||||    |||||| | ||| ||||| ||| ||||||||      
T  52082595 tgattcctagataagatctaggtgctgttattgttgattattgcttgtgttcactttgatatt----ggttactactttcctttgttccacacatcataa 52082500  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    ||| ||||||| |||||||||||||||||||||||||||    
T  52082499 tttgtattggtgtgattttgagtccgaattcacaacaaa 52082461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 36463317 - 36463196
Alignment:
Q  11 attagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt-tattggt 106  Q
    ||||||||||||| ||||||||||| |||||   |||| |||||||||||||    |||||  | ||| |||| |||| |||||||| |||| |||| ||    
T  36463317 attagatctaggtgttgttattattgttgttgcttgtgtttactttgatatt----ggttattactttcctttactccacacatcatagtttgtattagt 36463222  T
Q  107 atgattttgagtccgaattcacaaca 132  Q
     |||||||||||||||||||||||||    
T  36463221 gtgattttgagtccgaattcacaaca 36463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 54199840 - 54199708
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||| ||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    | ||||||| | ||| |||||||||  ||||||| |    
T  54199840 tgattcttagattagatctaggtgatgttattgctgattattgcttgtgttcactttgat----actggttactactttcctttgctccatacatcatcg 54199745  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||| ||||||| |||||||||||||||||||||||||    
T  54199744 tttgtattggtgtgattttgagtccgaattcacaaca 54199708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 52467290 - 52467159
Alignment:
Q  1 tgattcctagattagatctaggttttgttattatt----attgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| |||||||||||||| || |||||||||||    |||| ||||  ||||||||||    ||||||||||| ||| ||||||| | |||||||| |    
T  52467290 tgattactagattagatctatgtgttgttattattgatgattgcttgtctttactttgat----attggttaccactttcctttgcttcacacatcatag 52467195  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaa 130  Q
    ||| ||||||| ||| ||||||||||||||||||||    
T  52467194 tttgtattggtgtgagttttgagtccgaattcacaa 52467159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9927391 - 9927257
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||| ||||||||  |||||||    ||||||| ||||| |||||||||||||    ||| || | ||| ||||||||| |||||||| |    
T  9927391 tgattcctagattaaatctaggtgctgttattgttgattattgcttgtgtttactttgatatt----ggtaactactttcctttgctccacacatcatag 9927296  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||| |||||||  || |||||||||||||||||||||||    
T  9927295 tttatattggtgcgagttttgagtccgaattcacaacaa 9927257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 31474385 - 31474512
Alignment:
Q  3 attcctagattagatctaggttttgtta---ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt 99  Q
    ||||||||||||||||||||| ||||||   || || ||||||||| ||||||||||    |||| |||| | |||  |||||| | |||||||||||||    
T  31474385 attcctagattagatctaggtgttgttattgttgttgttgtttgtgtttactttgat----attgattactactttcatttgctacacacatcattgttt 31474480  T
Q  100 -tattggtatgattttgagtccgaattcacaaca 132  Q
     ||||||| |||  ||||||||||||||||||||    
T  31474481 gtattggtgtga--ttgagtccgaattcacaaca 31474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 52095290 - 52095161
Alignment:
Q  5 tcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||||||||||||||||| ||||||||    ||||||  ||||| | ||||||||||| |||    || | ||| ||||| ||| ||| |||| ||||     
T  52095290 tcctagattagatctaggtgttgttattgttgattattacttgtgttcactttgatattgatt----actactttcctttgttccacacgtcatagtttg 52095195  T
Q  100 tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||||||| ||||||||||||||||||||||||||    
T  52095194 tattggtgtgattttgagtccgaattcacaacaa 52095161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 45687059 - 45686985
Alignment:
Q  61 attggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    ||||||||| | ||| |||||||||  ||||||| |||| ||||||| |||||||||||| ||||||||||||||    
T  45687059 attggttactactttcctttgctccatacatcatagtttgtattggtgtgattttgagtctgaattcacaacaaa 45686985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 46147327 - 46147194
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| ||    
T  46147327 tgattactagattagatctaggtattgttattattgttgttgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatagt 46147232  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||  |||||| ||| ||||||| | |||||||||||||    
T  46147231 ttgcattggtgtgagttttgaggcggaattcacaacaa 46147194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 37229656 - 37229531
Alignment:
Q  3 attcctagattagatctaggtt--ttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    ||||||| ||||||||||||||  || || || |||||| ||||  |||||||||||||    |||||| | ||  | ||||||| |||| ||| |||||    
T  37229656 attcctaaattagatctaggttggttattgttgttattgcttgttgttactttgatatt----ggttactacttcccattgctccacacaacatagtttt 37229561  T
Q  101 attggtatgattttgagtccgaattcacaa 130  Q
    |||||| | |||||||||||||||||||||    
T  37229560 attggttttattttgagtccgaattcacaa 37229531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5429915 - 5429977
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatatt 59  Q
    |||||||||||||||||||||||  |||||||    ||||||||||||| | |||||||||||    
T  5429915 tgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatt 5429977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36994755 - 36994795
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt 41  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  36994755 tgattactagattagatctaggtgttgttattattgttgtt 36994795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 22834938 - 22834806
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||| |||||||| || || ||   |||| ||||||||||    ||||||||| | ||| ||||||||| |||||||| ||    
T  22834938 tgattcctagattagatctaggtgttgttattgttgttattacctgtgtttactttgat----attggttactactttcctttgctccacacatcatagt 22834843  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    || ||||||| ||||||||||||||||||||||||||    
T  22834842 ttgtattggtgtgattttgagtccgaattcacaacaa 22834806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21350939 - 21350811
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    |||||||||||||||||||| || |||||||| || ||||||||| ||||||||||    ||||||||| | ||| ||||||| | |||||| || |||     
T  21350939 tgattcctagattagatctaagtgttgttattgttgttgtttgtgtttactttgat----attggttactactttcctttgcttcacacatctttatttc 21350844  T
Q  101 attggtatga-ttttgagtccgaattcacaaca 132  Q
    |||||| ||| ||||||||||||||||||||||    
T  21350843 attggtgtgagttttgagtccgaattcacaaca 21350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 44700415 - 44700282
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| ||||||||||    ||||||||| | |||||||||||||   |||||| ||    
T  44700415 tgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttgat----attggttactacttttctttgctccatgcatcatagt 44700320  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    || ||||||| |||||||||||||||||||| ||||||    
T  44700319 ttgtattggtgtgattttgagtccgaattcaaaacaaa 44700282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 51352070 - 51351939
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||||| |||||| ||  || |   ||||||||||||||||||    |||||||| ||| ||||||||| |||||| | ||    
T  51352070 tgattcctagattagatctaggttt-gttattgttgctgctgcttgtgattactttgatatt----ggttaccactttcctttgctccacacatcgtagt 51351976  T
Q  98 tttattggtatgattttgagtccgaattcacaacaaa 134  Q
     |||||| | |||||||||||||||||||||||||||    
T  51351975 attattgatgtgattttgagtccgaattcacaacaaa 51351939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 29813297 - 29813431
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||| ||||||||||||||||  |||||||    ||||||||||||| | ||||||||||||    ||||| | ||||||||||||| |||||||| |    
T  29813297 tgattcttagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatta----gttactacttttctttgctccacacatcatag 29813392  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||| ||||||| ||| |||||||||||||||||||||||    
T  29813393 tttgtattggtgtgagttttgagtccgaattcacaacaa 29813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 2074954 - 2074883
Alignment:
Q  61 attggttaccatttttctttgctcctcacatcattgttttattggtatgattttgagtccgaattcacaaca 132  Q
    ||||||||| | ||| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||    
T  2074954 attggttactactttcctttgctccacacatcatagttttattggtgtgattttgggtccgaattcacaaca 2074883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 40734733 - 40734866
Alignment:
Q  1 tgattcctagattagatctaggttttgtta----ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||    ||||||||  ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  40734733 tgattcctagattagatctaggtgctgttattttttattatttcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 40734828  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||| |||||||||| |||||||||||||||    
T  40734829 tttgtattggtgtgattttgagaccgaattcacaacaa 40734866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 27305643 - 27305519
Alignment:
Q  5 tcctagattagatctaggtt--ttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttttat 102  Q
    ||||||||||||||||||||  || || || || ||| ||||  ||||||||||    ||||||||| | ||| ||||||||| |||||||| | |||||    
T  27305643 tcctagattagatctaggttggttattgttgttgttgcttgttgttactttgat----attggttactactttcctttgctccacacatcatag-tttat 27305549  T
Q  103 tggtatgattttgagtccgaattcacaaca 132  Q
    |||| |||||||||||||||||||||||||    
T  27305548 tggtgtgattttgagtccgaattcacaaca 27305519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9636056 - 9635922
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  9636056 tgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 9635961  T
Q  97 ttt-tattggtatgattttgagtcc-gaattcacaacaa 133  Q
    ||| ||||||| |||||||||| || |||||||||||||    
T  9635960 tttgtattggtgtgattttgagaccggaattcacaacaa 9635922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 51399050 - 51399183
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| | ||| | |||||||||||    | || | | ||| |||||||||  ||||||| |    
T  51399050 tgattcctagattagatctaggtgctgttattgttgattattgctagtgctcactttgatatt----gttttctactttcctttgctccatacatcatag 51399145  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  51399146 tttgtattggtatgattttgagtccgaattcacaacaa 51399183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9666402 - 9666270
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatatta-attggttaccatttttctttgctcctcacatcattgttt 99  Q
    ||||| ||||||||||||||||| ||||||||||| | |||  |  ||| |||| | | | ||||||||| | ||| ||||||||| || ||||| ||||    
T  9666402 tgattactagattagatctaggtgttgttattattgtagttgcttgtta-tttgctttgatattggttactactttcctttgctccacagatcatagttt 9666304  T
Q  100 -tattggtatgattttgagtccgaattcacaaca 132  Q
     ||||||| |||||||||||||||||||||||||    
T  9666303 gtattggtgtgattttgagtccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 40735621 - 40735752
Alignment:
Q  4 ttcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt 99  Q
    |||||| |||||||||||||  |||||||    ||||||||||||| | |||||||||||    |||||| | ||| ||||||||| ||||||||  |||    
T  40735621 ttcctatattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatt----ggttactactttcctttgctccacacatcataattt 40735716  T
Q  100 -tattggtatgattttgagtccgaattcacaacaaa 134  Q
     ||||||| |||||||||  ||||||||||||||||    
T  40735717 gtattggtgtgattttgataccgaattcacaacaaa 40735752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9581519 - 9581652
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||| ||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||| | |||||||| |    
T  9581519 tgattcatagattagatctaggtgctgttattgttgattattgcttgtgctcactttgat----attggttactactttcctttgcttcacacatcatag 9581614  T
Q  97 ttt-tattggtatgattttgagtcc-gaattcacaaca 132  Q
    ||| ||||||| ||||||||||||| ||||||||||||    
T  9581615 tttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 761141 - 761214
Alignment:
Q  62 ttggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaacaaag 135  Q
    |||||||| | ||| ||||||||| |||||||| |||| ||||||| |||||| |||||||||||||||||||||    
T  761141 ttggttactactttcctttgctccacacatcatagtttgtattggtgtgattt-gagtccgaattcacaacaaag 761214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37408695 - 37408827
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcat-t 95  Q
    |||||||||||||||||||||||  |||||||    ||||||||||||| | ||||| ||    ||||||||| | ||| ||||||||| |||||||| |    
T  37408695 tgattcctagattagatctaggtgctgttattgttgattattgtttgtgctcactttaat----attggttactactttcctttgctccacacatcatat 37408790  T
Q  96 gttttattggtatgattttgagtccgaattcacaaca 132  Q
     || ||||| | ||| |||||| ||||||||||||||    
T  37408791 tttgtattgatgtgactttgaggccgaattcacaaca 37408827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 5236308 - 5236255
Alignment:
Q  82 ctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    |||| |||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  5236308 ctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 5236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 32891386 - 32891459
Alignment:
Q  61 attggttaccatttttctttgctcctcacatcattgttttattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||||||||| | ||| ||||||||| |||||||| |||| |||||| ||| ||||||||||||| |||||||||    
T  32891386 attggttactactttcctttgctccacacatcatagtttcattggtgtgagttttgagtccgaagtcacaacaa 32891459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 29196314 - 29196187
Alignment:
Q  9 agattagatctaggttttgttattattattgtt---tgt-gattactttgatattaattggttaccatttttctttgctcctcacatcattgttt-tatt 103  Q
    ||||||||||||||| ||||||||||| |||||   ||| | || ||||||||||    |||||| | ||| ||||||||| |||||||| |||| ||||    
T  29196314 agattagatctaggtgttgttattattgttgttgcttgttgtttgctttgatatt----ggttactactttcctttgctccacacatcatagtttgtatt 29196219  T
Q  104 ggtatgat-tttgagtccgaattcacaacaaa 134  Q
    ||| |||  |||||||||||||||||||||||    
T  29196218 ggtgtgagatttgagtccgaattcacaacaaa 29196187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9634753 - 9634621
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| || ||||| |    
T  9634753 tgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccaca-atcatag 9634659  T
Q  97 ttt-tattggtatgattttgagtcc-gaattcacaaca 132  Q
    ||| ||||||| |||||||||| || ||||||||||||    
T  9634658 tttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 19683818 - 19683686
Alignment:
Q  3 attcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtt 98  Q
    |||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| |||||||||  ||||||| |||    
T  19683818 attcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccaaacatcatagtt 19683723  T
Q  99 t-tattggtatgattttgagtcc-gaattcacaacaa 133  Q
    | ||||||| ||| |||||| || |||||||||||||    
T  19683722 tgtattggtgtgagtttgagaccggaattcacaacaa 19683686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 23391844 - 23391711
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||  | ||| |||| |||| |||||||| ||    
T  23391844 tgattactagattagatctaggtgttgttattattgttgtttcttgtgttcactttgat----attggttattactttccttttctccacacatcatagt 23391749  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    || ||||||| ||| ||||| || ||||||||||||||    
T  23391748 ttgtattggtgtgagttttgtgttcgaattcacaacaa 23391711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 7762502 - 7762636
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||| ||||||||||||| ||||||||    ||||||  ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  7762502 tgattcctaaattagatctaggtgttgttattgttgattattacttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 7762597  T
Q  97 ttt-tattggtatgattttgagtcc-gaattcacaacaa 133  Q
    ||| ||||||| |  |||||||||| ||||| |||||||    
T  7762598 tttgtattggtgtagttttgagtcctgaattgacaacaa 7762636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14069765 - 14069632
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||||||||   ||||| |||||||||    |||| ||||| | ||| ||||||||| |||||||| ||    
T  14069765 tgattactagattagatctaggtgttgttattattattgttgcttgtgtttactttga----aattagttactactttcctttgctccacacatcatagt 14069670  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    || ||||||| ||| |||||||||||||||||||||||    
T  14069669 ttgtattggtgtgagttttgagtccgaattcacaacaa 14069632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14379793 - 14379660
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||||||||   ||||| |||||||||    |||| ||||| | ||| ||||||||| |||||||| ||    
T  14379793 tgattactagattagatctaggtgttgttattattattgttgcttgtgtttactttga----aattagttactactttcctttgctccacacatcatagt 14379698  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    || ||||||| ||| |||||||||||||||||||||||    
T  14379697 ttgtattggtgtgagttttgagtccgaattcacaacaa 14379660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23344205 - 23344332
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    |||||| ||||||| ||||||||||||||||| || ||| ||||| |||||| ||||||    |||||| | ||| ||||||||| |||||||| |||||    
T  23344205 tgattcgtagattaaatctaggttttgttattgttgttgcttgtggttacttggatatt----ggttactactttcctttgctccacacatcatagtttt 23344300  T
Q  101 attggtatgattttgagtccgaattcacaaca 132  Q
    |||| | |||||||| ||| ||||||||||||    
T  23344301 attgatgtgattttgggtctgaattcacaaca 23344332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 23555277 - 23555411
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  23555277 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 23555372  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||| ||||||| ||| |||||||||||||||||||||||    
T  23555373 tttgtattggtgtgagttttgagtccgaattcacaacaa 23555411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 41648945 - 41648812
Alignment:
Q  1 tgattcctagattagatctaggttttg---ttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    |||||||||||||||||||||||  ||   || || |||||| ||||| | ||||||||||||    ||||| | ||| ||||||||| |||||||| ||    
T  41648945 tgattcctagattagatctaggtgctgctattgttgttattgcttgtgttcactttgatatta----gttactactttcctttgctccacacatcatagt 41648850  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    || ||||||| |||||||||||||||||||||||||||    
T  41648849 ttgtattggtgtgattttgagtccgaattcacaacaaa 41648812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27348053 - 27348187
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||||||||| | |||||||||||    |||| | | ||| ||||||||| ||||||||      
T  27348053 tgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatt----ggttgctactttcctttgctccacacatcataa 27348148  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    ||| |||| || |||||||||||||||||||||||||||    
T  27348149 tttgtatttgtgtgattttgagtccgaattcacaacaaa 27348187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 31105328 - 31105200
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    ||||||||||||||||||| ||| |||||||| || ||| ||||| ||||||||||||| |||    || | ||| |||| |||| |||||||| |||||    
T  31105328 tgattcctagattagatcttggtgttgttattgttgttgcttgtgtttactttgatattgatt----actactttcctttactccacacatcatagtttt 31105233  T
Q  101 attggtatga-ttttgagtccgaattcacaaca 132  Q
    |||||| ||| ||||| || |||||||||||||    
T  31105232 attggtgtgagttttgtgttcgaattcacaaca 31105200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 23564997 - 23564868
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgtttt 100  Q
    ||||| |||||||||||||||||||||||||| || ||| ||||| ||||||||||    |||||| || | |||||||  |||| ||||||  || |||    
T  23564997 tgatttctagattagatctaggttttgttattgttgttgcttgtggttactttgat----attggtcactacttttcttcactccacacatctatg-ttt 23564903  T
Q  101 attggtatgattttgagtccgaattcacaacaaag 135  Q
    ||| || |||||||||||| ||||||||| |||||    
T  23564902 attagtgtgattttgagtctgaattcacatcaaag 23564868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 25616092 - 25616223
Alignment:
Q  2 gattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    |||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| |||||||||  ||||||| ||    
T  25616092 gattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccatacatcatagt 25616187  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| ||||||||||| || ||||||||||    
T  25616188 ttgtattggtgtgattttgagtacgtattcacaaca 25616223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 47676068 - 47675936
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| ||    
T  47676068 tgattactagattagatctaggtgttgttattattgttgttgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatagt 47675973  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    || ||||||| ||| ||||| ||||||||||||||||    
T  47675972 ttgtattggtgtgagttttgtgtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 48489667 - 48489798
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| |  || | |||||||||||    |||||| | ||| ||||||||| |||||||| |    
T  48489667 tgattcctagattagatctaggtgttgttattgttgattattgctcatgttcactttgatatt----ggttactactttcctttgctccacacatcatag 48489762  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaac 131  Q
    ||  ||||||| ||||||||||||||||||||||||    
T  48489763 ttggtattggtgtgattttgagtccgaattcacaac 48489798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4586397 - 4586531
Alignment:
Q  1 tgattcctagattagatctaggttttgtta----ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| ||||||||||||||||| ||||||    ||||||||| ||||| | |||||||    |||||||||||| ||| ||||||||| |||||||| |    
T  4586397 tgattactagattagatctaggtgttgttattgtttattattgcttgtgttcactttga----aattggttaccactttcctttgctccacacatcatag 4586492  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    |||  |||||| |||  ||||||||||||||||||||||    
T  4586493 tttacattggtgtgagatttgagtccgaattcacaacaa 4586531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 18126882 - 18127016
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||||| |||    || | ||| |||| |||| |||||||| |    
T  18126882 tgattcctagattagatctaggtgttgttattcttgattattgcttgtgttcactttgatattgatt----actactttcctttactccacacatcatag 18126977  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||| ||||||| ||| |||||||||||||||||||||||    
T  18126978 tttgtattggtgtgagttttgagtccgaattcacaacaa 18127016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 38671093 - 38671025
Alignment:
Q  65 gttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||||| ||||| ||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||    
T  38671093 gttactattttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 495919 - 495795
Alignment:
Q  1 tgattcctagattagatctaggttttgtta---ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||| ||||||   || |||||||||||| ||||||||||    ||||||||| | ||| ||||||||| || |||||  |    
T  495919 tgattcctagattagatctaggtgttgttattgttgttattgtttgtgtttactttgat----attggttactactttcctttgctccacatatcataat 495824  T
Q  98 tt-tattggtatgattttgagtccgaatt 125  Q
    || |||| || ||||||||||||| ||||    
T  495823 ttgtattagtgtgattttgagtccaaatt 495795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 1113889 - 1114021
Alignment:
Q  1 tgattcctagattagatctaggttttgtta---ttattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||| || |||   || |||||| ||||| ||||||||||||||    ||||||| ||| ||||||||| |||||||| ||    
T  1113889 tgattcctagattagatctaggtgttattattgttgttattgcttgtgtttactttgatatta----gttaccactttcctttgctccacacatcatagt 1113984  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    || ||||| | ||| |||||| || ||||||||||||    
T  1113985 ttgtattgatgtgagttttgattcggaattcacaaca 1114021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19502415 - 19502547
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||  |||||||||    |||||||||| | ||| ||||||||| |||||||| ||    
T  19502415 tgattactagattagatctaggtgttgttattattgttgttgcttgtatttactttga----aattggttactactttcctttgctccacacatcatagt 19502510  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    || |||| || ||| ||||||||| ||||||||||||    
T  19502511 ttgtattagtgtgagttttgagtctgaattcacaaca 19502547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 30024688 - 30024562
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   |||| |||||||||    |||||||||| | ||| ||||| ||     ||||| ||    
T  30024688 tgattactagattagatctaggtgttgttattattgttgttgcttgtgtttactttga----aattggttactactttcctttgttc-----atcatagt 30024598  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || |||||||||||||||||||||||||| ||||||    
T  30024597 ttatattggtatgattttgagtccgaatttacaaca 30024562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31519127 - 31519258
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattat---tgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||| ||||||||||| |   || || ||||||| ||||||||||    |||| |||||| |||||||| |||||| |  |    
T  31519127 tgattcctagattagatctaggtgttgttattattgttgctgcttatgattacattgatattaa----ttactatttttatttgctccacacatcttatt 31519222  T
Q  98 tttattggtatga-ttttgagtccgaattcacaaca 132  Q
    || |||||  ||| |||||||||| |||||||||||    
T  31519223 ttcattggcgtgagttttgagtccaaattcacaaca 31519258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 43864480 - 43864609
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||||    |||| |||||| ||| |||| |||| |||||||| |    
T  43864480 tgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgat----attgattaccactttcctttactccacacatcatag 43864575  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcac 128  Q
    ||| ||||||| ||| ||||||||||||||||||    
T  43864576 tttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 36146344 - 36146211
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgt-gattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| ||||||||||||||| | ||||||||||| |||||   ||| | || ||||||||||    |||||| | ||| ||||||||| |||||||| |    
T  36146344 tgattactagattagatctagatgttgttattattgttgttgcttgttgtttgctttgatatt----ggttactactttcctttgctccacacatcatag 36146249  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| |||| || | ||||||||||||||||||||||||    
T  36146248 tttgtatttgtgtaattttgagtccgaattcacaacaa 36146211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41317370 - 41317238
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||| | ||| |||||||||  ||||||| ||    
T  41317370 tgattactagattagatctaggtgttgttattattgttgttgcttgtgttcactttgat----attggttactactttcctttgctccaaacatcatagt 41317275  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    || ||||||| |||  ||||||| |||||||||||||    
T  41317274 ttgtattggtgtgagatttgagttcgaattcacaaca 41317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 35854155 - 35854269
Alignment:
Q  4 ttcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt 99  Q
    ||||||||||||||||||||  |||||||    ||||||||||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| ||||    
T  35854155 ttcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgat----attggttactactttcctttgctccacacatcatagttt 35854250  T
Q  100 -tattggtatgattttgag 117  Q
     |||| || ||||||||||    
T  35854251 gtatttgtgtgattttgag 35854269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 26417552 - 26417685
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||| ||||||| ||||||||  |||||||    ||||||| ||||| |||||||||||||    |||||| | ||| |||| |||| || ||||| |    
T  26417552 tgattcatagattatatctaggtgctgttattgttgattattgcttgtggttactttgatatt----ggttactactttcctttactccacatatcatag 26417647  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    ||| ||||||| ||| ||||||||||||||||||||||    
T  26417648 tttgtattggtgtgagttttgagtccgaattcacaaca 26417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29991289 - 29991406
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||| ||||||||||||| ||||||||    ||||||  ||||| | ||||||||    ||||||||| | ||||||||||||| |||||||| |    
T  29991289 tgattcctatattagatctaggtgttgttattgttgattattacttgtgctcactttgat----attggttactacttttctttgctccacacatcatag 29991384  T
Q  97 ttt-tattggtatgattttgag 117  Q
    ||| ||||||| ||| ||||||    
T  29991385 tttgtattggtgtgactttgag 29991406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 47673876 - 47673742
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||| |||||   |||| | |||||||||||    |||||| | |||  |||| ||| |||||||| ||    
T  47673876 tgattactagattagatctaggtgttgttattattgttgttgtttgtgttcactttgatatt----ggttactactttcttttgttccacacatcatagt 47673781  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaacaaa 134  Q
    || ||||||| ||| ||||| ||||||||||| ||||||    
T  47673780 ttgtattggtgtgagttttgtgtccgaattcataacaaa 47673742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 48491812 - 48491944
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||| ||||||||||||  ||||||||    ||||||| ||||| | |||||||||||    |||||| | ||| |||| |||| ||||| || |    
T  48491812 tgattcctatattagatctaggcgttgttattgttgattattgcttgtgttcactttgatatt----ggttactactttcctttactccgcacattatag 48491907  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||  ||||||| ||||||||| |||||||||||||||    
T  48491908 ttggtattggtgtgattttgaatccgaattcacaaca 48491944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 3047120 - 3047062
Alignment:
Q  74 tttctttgctcctcacatcattgtttt-attggtatgattttgagtccgaattcacaacaa 133  Q
    |||||||||||| |||||| ||||||| |||||| |||||||  |||||||||||||||||    
T  3047120 tttctttgctccacacatctttgttttcattggtgtgatttt--gtccgaattcacaacaa 3047062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 6430441 - 6430497
Alignment:
Q  79 ttgctcctcacatcattgttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||||||| |||||||| |||| ||||||| ||| |||||||||||||||||||||||    
T  6430441 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 6430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 42927129 - 42927261
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||||||||||||||||| |||||||| || |||||   |||| |||||||||||||| ||| |    | ||| ||||||||| |||||| ||||    
T  42927129 tgattcctagattagatctaggtgttgttattgttgttgttgcttgtgtttactttgatattagttgct----actttcctttgctccacacatctttgt 42927224  T
Q  98 ttta-ttggtatgattttgagtccgaattcacaacaa 133  Q
    |||  ||||||||||||||||| ||||||||||||||    
T  42927225 tttcgttggtatgattttgagttcgaattcacaacaa 42927261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 5887366 - 5887233
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||   ||||| | ||||||||    ||||||||| | ||| ||||||||| || ||||| ||    
T  5887366 tgattactagattagatttaggtgttgttattattgttgttgcttgtgttcactttgat----attggttactactttcctttgctccacatatcatagt 5887271  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    || ||||||| |||||||||||||||||||||||||||    
T  5887270 ttgtattggtgtgattttgagtccgaattcacaacaaa 5887233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 31183210 - 31183343
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||| ||||| ||||||||||| |||||   |||| |  |||||||||||    ||||| | ||| ||||||||| |||||||| ||    
T  31183210 tgattactagattagatataggtgttgttattatttttgttgcttgtgttccctttgatatta----gttactactttcctttgctccacacatcatggt 31183305  T
Q  98 tt-tattggtatgattttgagtccgaattcacaacaaa 134  Q
    || ||||||| |||||||||||||||||||||||||||    
T  31183306 ttgtattggtgtgattttgagtccgaattcacaacaaa 31183343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 30682855 - 30682721
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  30682855 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 30682760  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||| ||||||| ||| ||||||||||| |||||||||||    
T  30682759 tttgtattggtgtgagttttgagtccgtattcacaacaa 30682721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 16649705 - 16649635
Alignment:
Q  63 tggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    ||||||| | ||| ||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||    
T  16649705 tggttactactttcctttgctccacacatcatagtttgtattggtatgattttgagttcgaattcacaaca 16649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 42428362 - 42428237
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| ||||||||||||||||   ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| ||    
T  42428362 tgattactagattagatctaggtgttgttattattattgttgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatagt 42428267  T
Q  98 tt-tattggtatga-ttttgagtccgaatt 125  Q
    || ||||||| ||| |||||||| ||||||    
T  42428266 ttgtattggtgtgagttttgagttcgaatt 42428237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 534013 - 534128
Alignment:
Q  19 taggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt-tattggtatga-ttt 113  Q
    ||||| |||||||||||||||||   ||||  ||||||||    |||||||||| | ||| ||||||||| |||||||| |||| ||||||| ||| |||    
T  534013 taggtgttgttattattattgttgcttgtgtctactttga----aattggttactactttcctttgctccacacatcatagtttctattggtgtgagttt 534108  T
Q  114 tgagtccgaattcacaacaa 133  Q
    ||||||||||||||||||||    
T  534109 tgagtccgaattcacaacaa 534128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 538257 - 538387
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt---ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||| | ||||||||||| ||||   ||||| |||||||||    |||||||||  | ||| ||||||||| |||||||| ||    
T  538257 tgattactagattagatctagatgttgttattattgttgttgcttgtgtttactttga----aattggttattactttcctttgctccacacatcatagt 538352  T
Q  98 tt-tattggtatga-ttttgagtccgaattcacaa 130  Q
    || ||||||| ||| ||||||||| ||||||||||    
T  538353 ttatattggtgtgagttttgagtctgaattcacaa 538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13239988 - 13240118
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||| ||||||||||||||||| |||||||| || |||||   |||| ||||||| |    |||||||||| | ||| |||| |||| |||||||| ||    
T  13239988 tgattactagattagatctaggtgttgttattgttgttgttgcttgtgtttactttaa----aattggttactactttcctttactccacacatcatagt 13240083  T
Q  98 tt-tattggtatgattttgagtccgaattcacaac 131  Q
    || |||| || ||||||||||| ||||||||||||    
T  13240084 ttgtattagtgtgattttgagttcgaattcacaac 13240118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39468481 - 39468348
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||| |||||||||||||||||  |||||||    ||||||||||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  39468481 tgatttctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 39468386  T
Q  97 ttt-tattggtatga-ttttgagtccgaattcacaaca 132  Q
    ||| ||||||| | | |||||||| |||||||||||||    
T  39468385 tttgtattggtgtaagttttgagttcgaattcacaaca 39468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8565882 - 8565748
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgt------ttgtgattactttgatattaattggttaccatttttctttgctcctcacatcat 94  Q
    ||||| ||||||||||||||||| ||||||||||||||||      ||||| | ||||||    | ||||||||| | ||| ||||||||| ||||||||    
T  8565882 tgattactagattagatctaggtgttgttattattattgttgttgcttgtgttcactttg----ttattggttactactttcctttgctccacacatcat 8565787  T
Q  95 tgttt-tattggtatgattttgagtccgaattcacaaca 132  Q
     |||| |||| || ||||||||| ||| |||||||||||    
T  8565786 agtttatattagtgtgattttgaatccaaattcacaaca 8565748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 33831975 - 33832046
Alignment:
Q  62 ttggttaccatttttctttgctcctcacatcattgttt-tattggtatgattttgagtccgaattcacaaca 132  Q
    |||||||| | ||| ||||||||| |||||||| |||| |||| || | |||||||||||||||||||||||    
T  33831975 ttggttactactttcctttgctccacacatcatagtttgtatttgtgtaattttgagtccgaattcacaaca 33832046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 40147555 - 40147619
Alignment:
Q  79 ttgctcctcacatcattgttt-tattggtatga-ttttgagtccgaattcacaacaaagctatta 141  Q
    ||||||| |||||||| |||| ||||||| ||| |||||||||||||||||||||| | ||||||    
T  40147555 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacacaactatta 40147619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14521613 - 14521477
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtt---tgtgattactttgatattaattggttaccat----ttttctttgctcctcacatca 93  Q
    ||||||||||||||||||||||| ||||| ||||| |||||   |||| |||||||||    |||||||||| |     ||||||||||||| |||||||    
T  14521613 tgattcctagattagatctaggtgttgttgttattgttgttgcttgtgtttactttga----aattggttactacgtacttttctttgctccacacatca 14521518  T
Q  94 ttgttttattggtatga-ttttgagtccgaattcacaacaa 133  Q
    | |||| |||||| ||| |||||||||||||||||||||||    
T  14521517 tagtttcattggtgtgagttttgagtccgaattcacaacaa 14521477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26954222 - 26954091
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgat---tactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    |||||||||||||||||||||||  ||||||| || || ||| | ||   ||||||||    |||||||||| | |||  |||||||| |||||||| ||    
T  26954222 tgattcctagattagatctaggtgctgttattgttgttatttcttatgtttactttga----aattggttactactttcttttgctccacacatcatagt 26954127  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| |||||||||||||||||||||||||    
T  26954126 ttgtattggtgtgattttgagtccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28137342 - 28137211
Alignment:
Q  1 tgattcctagattagatctaggttttgttattat---tattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgt 97  Q
    ||||||||| |||||||||| || |||||||| |   ||||| ||||| |||||||||||||    |||||| | ||| ||||||||| ||| |||| ||    
T  28137342 tgattcctatattagatctatgtgttgttattgtcgttattgcttgtgtttactttgatatt----ggttactactttcctttgctccacacgtcatagt 28137247  T
Q  98 tt-tattggtatgattttgagtccgaattcacaaca 132  Q
    || ||||||| |||||||||| ||||||||||||||    
T  28137246 ttgtattggtgtgattttgagaccgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 5409002 - 5408867
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  5409002 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgctcactttgat----attggttactactttcctttgctccacacatcatag 5408907  T
Q  97 ttt-tattggtatgattttgagtc-cgaattcacaacaaa 134  Q
    ||| ||||||| ||| |||||| |  ||||||||||||||    
T  5408906 tttgtattggtgtgactttgagactggaattcacaacaaa 5408867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 5413327 - 5413192
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  5413327 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgctcactttgat----attggttactactttcctttgctccacacatcatag 5413232  T
Q  97 ttt-tattggtatgattttgagtc-cgaattcacaacaaa 134  Q
    ||| ||||||| ||| |||||| |  ||||||||||||||    
T  5413231 tttgtattggtgtgactttgagactggaattcacaacaaa 5413192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9182963 - 9182865
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||| | ||||||||    ||||||||| | ||| ||||||||| |||||||| |    
T  9182963 tgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgat----attggttactactttcctttgctccacacatcatag 9182868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5406132 - 5406002
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt-attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt 99  Q
    |||||||||||||||||||||||  | ||||| ||||||| ||||| | ||||| ||    ||||||||| | |||||||| |||| |||||||| ||||    
T  5406132 tgattcctagattagatctaggtgctattattgattattgcttgtgctcactttaat----attggttactacttttctttactccacacatcatagttt 5406037  T
Q  100 -tattggtatgattttgagtcc-gaattcacaaca 132  Q
     ||||||| ||| ||| || || ||||||||||||    
T  5406036 gtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5410457 - 5410327
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt-attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt 99  Q
    |||||||||||||||||||||||  | ||||| ||||||| ||||| | ||||| ||    ||||||||| | |||||||| |||| |||||||| ||||    
T  5410457 tgattcctagattagatctaggtgctattattgattattgcttgtgctcactttaat----attggttactacttttctttactccacacatcatagttt 5410362  T
Q  100 -tattggtatgattttgagtcc-gaattcacaaca 132  Q
     ||||||| ||| ||| || || ||||||||||||    
T  5410361 gtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 16569333 - 16569389
Alignment:
Q  78 tttgctcctcacatcattgttt--tattggtatgattttgagtccgaattcacaaca 132  Q
    |||||||| |||||||| |||   ||||||| |||||||||||||||||||||||||    
T  16569333 tttgctccacacatcatagttgaatattggtgtgattttgagtccgaattcacaaca 16569389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 257300 - 257244
Alignment:
Q  77 ctttgctcctcacatcattgttttattggtatgattttgagtccgaattcacaacaa 133  Q
    ||||||||| ||||| ||  || ||||||| ||||||||||| ||||||||||||||    
T  257300 ctttgctccacacattataattatattggtgtgattttgagttcgaattcacaacaa 257244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 602958 - 602902
Alignment:
Q  79 ttgctcctcacatcattgttt-tattggtatga-ttttgagtccgaattcacaacaa 133  Q
    ||||||| |||||||| |||| ||||||| ||| |||||||||||||||||||||||    
T  602958 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 602902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 20347 - 20215
Alignment:
Q  1 tgattcctagattagatctaggttttgttatt----attattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattg 96  Q
    |||||||||||||||||||||||  |||||||    ||||||| ||||| | ||||||| |||    |||||| |  || ||||||||| |||||||| |    
T  20347 tgattcctagattagatctaggtgctgttattgttaattattgcttgtgttcactttgacatt----ggttactaccttcctttgctccacacatcatag 20252  T
Q  97 ttt-tattggtatgattttgagtccgaattcacaacaa 133  Q
    ||| ||||||||||| || |||||||||||||||||||    
T  20251 tttgtattggtatgagtt-gagtccgaattcacaacaa 20215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 149034 - 148914
Alignment:
Q  1 tgattcctagattagatctaggttttgttattattattgtttgtgattactttgatattaattggttaccatttttctttgctcctcacatcattgttt- 99  Q
    ||||||||||||||||| ||||| ||||||||      | ||||| |||||||||| ||    |||||| | ||| ||||||||| ||||| || ||||     
T  149034 tgattcctagattagatttaggtgttgttatt------gcttgtgtttactttgatgtt----ggttactactttcctttgctccacacattatagtttg 148945  T
Q  100 tattggtatgattttgagtccgaattcacaa 130  Q
    ||||| | |||||||||||||||||||||||    
T  148944 tattgatgtgattttgagtccgaattcacaa 148914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University