View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11929_high_17 (Length: 284)
Name: NF11929_high_17
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 45103754 - 45104020
Alignment:
| Q |
1 |
cagaatgctactggtaaaatataagaatgcttcattctcaacaaacaaatattgaagccaaaactacctagtctctattctctataaaacttgaaaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45103754 |
cagaatgctactggtaaaatataagaatgcttcattctcaacaaacaaatattgaagccaaaactacctagtctctattctccataaaacttgaaaactt |
45103853 |
T |
|
| Q |
101 |
aagaaggtactataagcactacaacacacacaagttgcaagttgcaacaattttaactaaatttagcttttggagtgcatgcagaatcaaaagtgcaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103854 |
aagaaggtactataagcactacaacacaaacaagttgcaagttgcaacaattttaactaaatttagcttttggagtgcatgcagaatcaaaagtgcaagt |
45103953 |
T |
|
| Q |
201 |
tactatatatttattaataagtcatagtggaagttctgttaaagtatactatatcatgttcatgttg |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103954 |
tactatatatttattaataagtcatagtggaagttctgttaaagtatactatatcatgttcatgttg |
45104020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University