View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_high_24 (Length: 228)
Name: NF11929_high_24
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_high_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 4104733 - 4104523
Alignment:
| Q |
17 |
cagagacgtcgtctgcttcatcatatgtgtttagttttatcaactttatatttttcatcttctatagtttatgcacnnnnnnnnnnagagaagtttacgc |
116 |
Q |
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| T |
4104733 |
cagagacgtcgtctgcttcatcatatgtgtttagttttgtcaactttatatttttcatcttctatagtttacgcacatttttttt-agagaagtttacgc |
4104635 |
T |
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| Q |
117 |
acattttaaaagtatacacaaatcaaatgacattgtatttgacatcaacatttttatgttcaaaaatcatttctttatataaaacacatggctaaattgt |
216 |
Q |
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| T |
4104634 |
acattttaaaagtatacacaaatcaaatgacattgtatttgacatcaacatttttatgttcaaaaaccatttctttatataaaatacatggctaaattgt |
4104535 |
T |
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| Q |
217 |
atttttggtccc |
228 |
Q |
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|||||||||||| |
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| T |
4104534 |
atttttggtccc |
4104523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 497029 - 496989
Alignment:
| Q |
136 |
aaatcaaatgacattgtatttgacatcaacatttttatgtt |
176 |
Q |
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| T |
497029 |
aaatcaaatgacattgtatttgacatcaaaattttgatgtt |
496989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 32122297 - 32122373
Alignment:
| Q |
116 |
cacattttaaaagtatacacaaatcaaatgacattgtatttgacatcaacatttttatgttcaaaaatcatttcttt |
192 |
Q |
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||||||| |||| || ||| |||||||| | || |||||||||||||| ||||| ||||| ||| ||||||||||| |
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| T |
32122297 |
cacatttaaaaaatacacaaaaatcaaagggcaccgtatttgacatcaaaattttgatgttaaaacatcatttcttt |
32122373 |
T |
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