View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11929_low_1 (Length: 753)

Name: NF11929_low_1
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11929_low_1
NF11929_low_1
[»] chr7 (12 HSPs)
chr7 (422-744)||(43403210-43403532)
chr7 (18-315)||(43402819-43403104)
chr7 (504-593)||(41262528-41262616)
chr7 (428-478)||(35589412-35589462)
chr7 (424-478)||(8163644-8163698)
chr7 (422-478)||(40337065-40337121)
chr7 (422-466)||(41326087-41326131)
chr7 (424-478)||(2362383-2362437)
chr7 (654-721)||(41262626-41262692)
chr7 (607-652)||(43404314-43404359)
chr7 (422-478)||(28089168-28089224)
chr7 (424-464)||(31637762-31637802)
[»] scaffold0306 (1 HSPs)
scaffold0306 (422-478)||(13055-13111)
[»] scaffold0152 (1 HSPs)
scaffold0152 (422-478)||(22216-22272)
[»] chr3 (13 HSPs)
chr3 (422-478)||(36404221-36404277)
chr3 (422-478)||(29360516-29360572)
chr3 (424-478)||(47599398-47599452)
chr3 (425-478)||(35534516-35534569)
chr3 (422-478)||(46487303-46487359)
chr3 (423-478)||(45603018-45603073)
chr3 (428-478)||(16353494-16353544)
chr3 (422-478)||(39391991-39392047)
chr3 (422-478)||(48944104-48944160)
chr3 (422-478)||(54882991-54883047)
chr3 (423-478)||(37115887-37115942)
chr3 (422-478)||(3618339-3618395)
chr3 (425-478)||(48644555-48644608)
[»] chr2 (17 HSPs)
chr2 (422-478)||(27004483-27004539)
chr2 (422-478)||(30757183-30757239)
chr2 (422-478)||(14786268-14786324)
chr2 (422-478)||(15070389-15070445)
chr2 (425-478)||(37060081-37060134)
chr2 (422-478)||(4382241-4382297)
chr2 (422-478)||(5959000-5959056)
chr2 (422-478)||(28107487-28107543)
chr2 (423-478)||(13274235-13274289)
chr2 (423-478)||(30609686-30609741)
chr2 (425-478)||(27969521-27969574)
chr2 (422-478)||(7747944-7748000)
chr2 (422-478)||(21423399-21423455)
chr2 (423-478)||(6974517-6974572)
chr2 (424-478)||(5807321-5807375)
chr2 (429-478)||(43022888-43022936)
chr2 (422-478)||(37802835-37802891)
[»] chr1 (10 HSPs)
chr1 (422-478)||(18808812-18808868)
chr1 (422-478)||(36290625-36290681)
chr1 (425-478)||(24909510-24909563)
chr1 (425-478)||(41998881-41998934)
chr1 (422-478)||(11121891-11121947)
chr1 (422-478)||(39001981-39002037)
chr1 (428-478)||(794947-794997)
chr1 (422-467)||(7409822-7409867)
chr1 (422-478)||(3695440-3695496)
chr1 (428-478)||(26653945-26653995)
[»] scaffold0121 (1 HSPs)
scaffold0121 (422-478)||(37402-37458)
[»] chr8 (13 HSPs)
chr8 (422-478)||(36470134-36470190)
chr8 (422-478)||(39436875-39436931)
chr8 (428-478)||(23403632-23403682)
chr8 (424-478)||(30204649-30204703)
chr8 (422-478)||(14842342-14842398)
chr8 (423-478)||(4623850-4623905)
chr8 (422-478)||(21567741-21567797)
chr8 (442-478)||(22798575-22798611)
chr8 (423-478)||(16656012-16656067)
chr8 (428-478)||(3001382-3001432)
chr8 (427-478)||(29958518-29958569)
chr8 (423-478)||(37630036-37630091)
chr8 (424-478)||(4234212-4234266)
[»] chr6 (9 HSPs)
chr6 (422-478)||(444555-444611)
chr6 (422-478)||(2814889-2814945)
chr6 (424-478)||(6200163-6200217)
chr6 (422-478)||(23774103-23774159)
chr6 (422-478)||(24640351-24640407)
chr6 (431-478)||(2993592-2993639)
chr6 (422-472)||(4032326-4032376)
chr6 (424-478)||(34710145-34710199)
chr6 (422-478)||(1067834-1067891)
[»] chr4 (11 HSPs)
chr4 (422-478)||(23249504-23249560)
chr4 (422-478)||(35929741-35929797)
chr4 (422-478)||(36609412-36609468)
chr4 (423-478)||(27733410-27733465)
chr4 (424-478)||(827863-827917)
chr4 (422-478)||(21555414-21555470)
chr4 (423-478)||(44243696-44243751)
chr4 (429-478)||(56100144-56100193)
chr4 (423-478)||(12701072-12701127)
chr4 (424-478)||(35749419-35749473)
chr4 (422-463)||(53583470-53583511)
[»] scaffold0302 (1 HSPs)
scaffold0302 (423-478)||(18503-18558)
[»] chr5 (12 HSPs)
chr5 (423-478)||(3729333-3729388)
chr5 (423-478)||(8159070-8159125)
chr5 (424-478)||(34766885-34766939)
chr5 (422-472)||(38451038-38451088)
chr5 (424-478)||(41910219-41910273)
chr5 (422-478)||(39508315-39508371)
chr5 (423-478)||(21020717-21020772)
chr5 (423-478)||(21583883-21583938)
chr5 (429-478)||(20815704-20815753)
chr5 (422-478)||(9793634-9793690)
chr5 (423-478)||(41929375-41929430)
chr5 (422-472)||(20736157-20736207)
[»] scaffold0025 (1 HSPs)
scaffold0025 (425-478)||(67906-67959)
[»] scaffold0532 (1 HSPs)
scaffold0532 (422-478)||(11353-11409)
[»] scaffold1248 (1 HSPs)
scaffold1248 (423-478)||(1002-1057)
[»] scaffold0952 (1 HSPs)
scaffold0952 (423-478)||(1256-1311)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 422 - 744
Target Start/End: Original strand, 43403210 - 43403532
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatatatgtcattcattttttaataccaaatttcagaataagggaata 521  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43403210 gggactaaaactaaaatatgtaaaaggataactattatgataagaggacttgtatatatgtcattcattttttagtaccaaatttcagaataagggaata 43403309  T
Q  522 gtataccaattgaaggcaaagaaaaatatttggactcagaatacttagaagactttacctcaccctaaagtgtctctattaatacttagtcatcgtgagt 621  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43403310 gtataccaattgaaggcaaagaaaaatatttggactcggaatacttagaagactttacctcaccctaaagtgtctctattaatacttagtcatcgtgagt 43403409  T
Q  622 ttaactcaattaacagagacaatgtatagtaatgttcagggttatgacttgtggggtgtgaaatcttgatttaacctacattaccaaacttttaggctta 721  Q
    ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43403410 ttaactcaattaatagagacaatgtatagtaatgttcagagctatgacttgtggggtgtgaaatcttgatttaacctacattaccaaacttttaggctta 43403509  T
Q  722 tcatgaaactttcttcttcttct 744  Q
    |||||||||||||||||||||||    
T  43403510 tcatgaaactttcttcttcttct 43403532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 43402819 - 43403104
Alignment:
Q  18 ctatgcaatgctcttatcttatgcctggaataggggtggcttagaaacaaaggtgtggttcttgccaccagaaattcctttttctaacaacactcagttt 117  Q
    ||||| ||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43402819 ctatgtaatgctcttatcttatgcctgcaatata--tggcttagaaacaaaggtgtggttcttgccaccagaaattcctttttctaacaacactcagttt 43402916  T
Q  118 tgcaaaactcactgccaaccgtttcggccgtgatttccacaagctacaaagtgcataacttaacatagtactattagttaataatttgatggctgtagat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43402917 tgcaaaactcactgccaaccgtttcggccgtgatttccacaagctacaaagtgcataacttaacatggtactattagttaataatttgatggctgtagat 43403016  T
Q  218 cattttgtcttggaaaaagaaaatgaccaagaacactacataacattatgtctctttcaaaaaataataatattatgagcttgtttgaaacacttctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  43403017 cattttgtcttggaaaaagaaaatgaccaagaacactacataacattatgtctctttc----------aatattatgagcttgtttgaaacacttctc 43403104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 504 - 593
Target Start/End: Original strand, 41262528 - 41262616
Alignment:
Q  504 tttcagaataagggaatagtataccaattgaaggcaaagaaaaatatttggactcagaatacttagaagactttacctcaccctaaagtg 593  Q
    |||||| |||||||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  41262528 tttcaggataagggaatagtatatcaattgaaggcagaaaaaaa-atttggactcagaatacttagaatactttacctcaccctaaagtg 41262616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 35589412 - 35589462
Alignment:
Q  428 aaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  35589412 aaaactaaaatatataaaaggataactattatgaaaagaggacttgtatat 35589462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 8163644 - 8163698
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| || ||||| |||||||||||||||||||| ||||||||||    
T  8163644 gactaaaactaaaacatgtaaaaagataactattgtgagaagagaacttgtatat 8163698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 40337065 - 40337121
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| ||||||||||||||||||| |||||| ||||    
T  40337065 gggactaaaactaaaacatgtaaaatgataactattgtgagaagatgacttgcatat 40337121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 41326131 - 41326087
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaaga 466  Q
    |||||||||||||||| || |||||||||||||||||||||||||    
T  41326131 gggactaaaactaaaacatgtaaaaggataactattgtgagaaga 41326087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 2362383 - 2362437
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||||  ||||| ||||||||||||||||||| || ||||||||    
T  2362383 gactaaaactaaaataagtaaaatgataactattgtgagaagaagatttgtatat 2362437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 721
Target Start/End: Original strand, 41262626 - 41262692
Alignment:
Q  654 tgttcagggttatgacttgtggggtgtgaaatctt-gatttaacctacattaccaaacttttaggctta 721  Q
    ||||||| | ||||||||||| |||||| |||||| ||||||  |||||||||||||||||||||||||    
T  41262626 tgttcagagctatgacttgtgaggtgtggaatctttgattta--ctacattaccaaacttttaggctta 41262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 652
Target Start/End: Complemental strand, 43404359 - 43404314
Alignment:
Q  607 ttagtcatcgtgagtttaactcaattaacagagacaatgtatagta 652  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||    
T  43404359 ttagtcatcgtgaatttaactcaattagtagagacaatgtatagta 43404314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 28089224 - 28089168
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| |||||||||||| |||||| || ||||||||    
T  28089224 gggactaaaactaaaacatgtaaaatgataactattgtaagaagatgatttgtatat 28089168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 31637802 - 31637762
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaa 464  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  31637802 gactaaaactaaaacatataaaaggataactattatgagaa 31637762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 13055 - 13111
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  13055 gggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 13111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 22272 - 22216
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22272 gggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 22216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 36404221 - 36404277
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  36404221 gggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 36404277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 29360572 - 29360516
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  29360572 gggactaaaactaaaacatgtaaaaggataactactgtgagaagaggacttgtatat 29360516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 47599452 - 47599398
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  47599452 gactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatat 47599398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 35534569 - 35534516
Alignment:
Q  425 actaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  35534569 actaaaactaaaacatataaaatgataactattgtgagaagaagacttgtatat 35534516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 46487359 - 46487303
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||    
T  46487359 gggactaaaactaaaacatataaaatgataactattgtgagaagaagacttatatat 46487303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 45603073 - 45603018
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || |||||||||||||||||||| |||| |||||||||||    
T  45603073 ggactaaaactaaaacatgtaaaaggataactattgtgataagatgacttgtatat 45603018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 16353494 - 16353544
Alignment:
Q  428 aaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  16353494 aaaactaaaacatgtaaaaggataactattgtgaaaagaggacttgtatat 16353544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 39392047 - 39391991
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||    
T  39392047 gggactaaaactaaaacatgtaaaaggataactattgtgaaaagaaaacttgtatat 39391991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 48944104 - 48944160
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||| |||| || ||||| |||||||||||| ||||||||||||||||||    
T  48944104 gggactaaaacaaaaacatgtaaaatgataactattgtaagaagaggacttgtatat 48944160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 54882991 - 54883047
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| |  ||||||||||| ||||||||||||||||||| |||||    
T  54882991 gggactaaaactaaaacacgtaaaaggataaatattgtgagaagaggacttctatat 54883047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 37115887 - 37115942
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||| ||||| |||||    
T  37115887 ggactaaaactaaaacatataaaatgataactattgcgagaagatgacttatatat 37115942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 3618339 - 3618395
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||  ||||||||||    
T  3618339 gggactaaaactaaaacatgtaaaaagataaatattgtgagaagaaaacttgtatat 3618395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 48644608 - 48644555
Alignment:
Q  425 actaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||| || ||||| ||||| ||||||||||||| || ||||||||    
T  48644608 actaaaactaaaacatgtaaaatgataaatattgtgagaagatgatttgtatat 48644555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 27004539 - 27004483
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  27004539 gggactaaaactaaaacatataaaaggataactattgtgagaagaggacttatatat 27004483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 30757183 - 30757239
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  30757183 gggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 30757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 14786324 - 14786268
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  14786324 gggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatat 14786268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 15070389 - 15070445
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  15070389 gggactaaaacaaaaacatataaaaggataactattgtgagaagaggatttgtatat 15070445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 37060081 - 37060134
Alignment:
Q  425 actaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  37060081 actaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatat 37060134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 4382297 - 4382241
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||    
T  4382297 gggactaaaactaaaacatgtaaaatgataactattgtgagaagagaacttgtatat 4382241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 5959056 - 5959000
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  5959056 gggactaaaactaaaacatgtaaaaggataactattacgagaagaggacttgtatat 5959000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 28107487 - 28107543
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  28107487 gggattaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatat 28107543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 13274289 - 13274235
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||    
T  13274289 ggactaaaactaaaacatgtaaaag-ataactattgtgagaagaggacttgtatat 13274235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 30609686 - 30609741
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||    
T  30609686 ggactaaaactaaaacatgtaaaatgataactattgtgagaagaagacttgtatat 30609741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 27969574 - 27969521
Alignment:
Q  425 actaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  27969574 actaaaattaaaacatataaaaggataactattgtgagaagtgaacttgtatat 27969521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 7747944 - 7748000
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| ||||||| |||| ||||||||||||||||||    
T  7747944 gggactaaaactaaaacatgtaaaatgataactcttgtaagaagaggacttgtatat 7748000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 21423455 - 21423399
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||| |||||||||||||||||| || |||||||||||    
T  21423455 gggactaaaactaaaacatgtaataggataactattgtgagatgaagacttgtatat 21423399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 6974517 - 6974572
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||| |||||||||||||||||||| |||| |||||    
T  6974517 ggactaaaactaaaacatgtaaaatgataactattgtgagaagagcacttatatat 6974572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 5807321 - 5807375
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| ||||||||||||||||||||||| ||| | | ||||||||    
T  5807321 gactaaaactaaaacatataaaaggataactattgtgaaaagggaatttgtatat 5807375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 43022888 - 43022936
Alignment:
Q  429 aaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||||    
T  43022888 aaactaaaacatataaaaggataattat-gtgagaagaggacttgtatat 43022936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 37802835 - 37802891
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| ||||| |||| |||||||| |||||||||||    
T  37802835 gggactaaaactaaaacatgtaaaaagataaatattatgagaagaagacttgtatat 37802891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 18808868 - 18808812
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  18808868 gggactaaaactaaaacatataaaaggataactattgtgagaagaagacttgtatat 18808812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 36290681 - 36290625
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||||||||||    
T  36290681 gggactaaaactaaaacatgtaaaatgataactattgtcagaagaggacttgtatat 36290625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 24909510 - 24909563
Alignment:
Q  425 actaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||    
T  24909510 actaaaacgaaaatatgtaaaaggataactattgtgagaagagaactagtatat 24909563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 41998881 - 41998934
Alignment:
Q  425 actaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||    
T  41998881 actaaaactaaaacatataaaaagataaatattgtgagaagaagacttgtatat 41998934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 11121947 - 11121891
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| ||||||||||||| ||||| |||||||||||    
T  11121947 gggactaaaactaaaacatgtaaaatgataactattgtgcgaagatgacttgtatat 11121891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 39002037 - 39001981
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||  | ||||||||||||||||    
T  39002037 gggactaaaactaaaacatgtaaaaggataactattgcaaaaagaggacttgtatat 39001981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 794997 - 794947
Alignment:
Q  428 aaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||| || ||||||||||||||||||||||||| ||| |||||||    
T  794997 aaaactaaaacatgtaaaaggataactattgtgagaagaagacctgtatat 794947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 7409822 - 7409867
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagag 467  Q
    |||||||||||||||| || |||||||||||||||| |||||||||    
T  7409822 gggactaaaactaaaacatgtaaaaggataactattatgagaagag 7409867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 3695496 - 3695440
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| |||||||||| ||| ||| ||||||||||||    
T  3695496 gggactaaaactaaaacatgtaaaatgataactattatgaaaaggggacttgtatat 3695440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 26653945 - 26653995
Alignment:
Q  428 aaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||| ||||| || |||||||||||| |||||||||||||||| |||||||    
T  26653945 aaaattaaaacatgtaaaaggataaccattgtgagaagaggacctgtatat 26653995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 37402 - 37458
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  37402 gggactaaaactaaaatatgtaaaatgataactattgcgagaagaggacttgtatat 37458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 36470134 - 36470190
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  36470134 gggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatat 36470190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 39436931 - 39436875
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  39436931 gggactaaaactaaaacatataaaaaaataactattgtgagaagaggacttgtatat 39436875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 23403682 - 23403632
Alignment:
Q  428 aaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  23403682 aaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 23403632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 30204649 - 30204703
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  30204649 gactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatat 30204703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 14842398 - 14842342
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  14842398 gggattaaaactaaaatatgtaaaatgataactattgtgaaaagaggacttgtatat 14842342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 4623850 - 4623905
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||||||||||||||||||||||| ||||| |||||    
T  4623850 ggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttatatat 4623905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 21567797 - 21567741
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||| ||||||||    
T  21567797 gggactaaaactaaaacatgtaaaaagataactattgtaagaagaggatttgtatat 21567741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 478
Target Start/End: Complemental strand, 22798611 - 22798575
Alignment:
Q  442 taaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||||||||||||||||||||||||    
T  22798611 taaaaggataactattgtgagaagaggacttgtatat 22798575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 16656067 - 16656012
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||| ||||||||||||||||||| | |||||||||    
T  16656067 ggactaaaactaaaacatgtaaaatgataactattgtgagaagaaggcttgtatat 16656012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 3001382 - 3001432
Alignment:
Q  428 aaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||| || ||||| |||||| ||||||||||||||||||||||||    
T  3001382 aaaactaaaacatgtaaaaagataaccattgtgagaagaggacttgtatat 3001432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 478
Target Start/End: Original strand, 29958518 - 29958569
Alignment:
Q  427 taaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||| || |||||||||||||||||| | |||| |||||||||||    
T  29958518 taaaactaaaacatgtaaaaggataactattgtaataagatgacttgtatat 29958569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 37630091 - 37630036
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||||| ||||||||| ||||||||| ||| |||||    
T  37630091 ggactaaaactaaaacatgtaaaaggctaactattgcgagaagagggcttatatat 37630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 4234266 - 4234212
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||| ||||||||| || ||||||| ||||||||| ||||||| |||||||||||    
T  4234266 gactcaaactaaaacatgtaaaaggctaactattgcgagaagatgacttgtatat 4234212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 444611 - 444555
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  444611 gggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatat 444555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 2814889 - 2814945
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  2814889 gggactaaaactaaaacatgtaaaatgataactattgtgagaagaggacttgtatat 2814945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 6200163 - 6200217
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  6200163 gactaaaactaaaatatgtaaaaggataactattgtgagaagagaatttgtatat 6200217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 23774159 - 23774103
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  23774159 gggattaaaactaaaacatataaaaggataactattatgagaagagaacttgtatat 23774103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 24640351 - 24640407
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  24640351 gggactaaaactaaaacatatagaaggataactattatgagaagaggacttgcatat 24640407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 478
Target Start/End: Original strand, 2993592 - 2993639
Alignment:
Q  431 actaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  2993592 actaaaagatataaaaggataactattgtgagaagagaacttgtatat 2993639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 4032326 - 4032376
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggactt 472  Q
    |||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  4032326 gggactaaaactaaaacatataaaaagataactattgtgagaagatgactt 4032376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 34710199 - 34710145
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34710199 gactaaaactaaaacatataaaagaataactactgtgagaagagaacttgtatat 34710145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 1067891 - 1067834
Alignment:
Q  422 gggactaaaactaaaatatataaaa-ggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| |||||||| || |||||||||||||||||| ||||||||||    
T  1067891 gggactaaaactaaaacatataaaaagggtaactattgtgagaagagaacttgtatat 1067834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 23249560 - 23249504
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  23249560 gggactaaaactaaaacatgtaaaaggataactattgtgagaagagggcttgtatat 23249504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 35929797 - 35929741
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  35929797 gggactaaaactaaaacatataaaatgataactattgtgagaagaggacttatatat 35929741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 36609412 - 36609468
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  36609412 gggactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatat 36609468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 27733465 - 27733410
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||    
T  27733465 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggtcttgtatat 27733410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 827917 - 827863
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  827917 gactaaaactaaaacatgtaaaaagataactattgtgagaagaggacttgtatat 827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 21555470 - 21555414
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || ||||||||||||||||||||||||| ||||| |||||    
T  21555470 gggactaaaactaaaacatgtaaaaggataactattgtgagaagaagacttatatat 21555414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 44243696 - 44243751
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||    
T  44243696 ggactaaaattaaaacatataaaaggataactattgtaagaagatgacttgtatat 44243751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 56100144 - 56100193
Alignment:
Q  429 aaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  56100144 aaactaaaacatgtaaaaggataactattgcgagaagaggacttgtatat 56100193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 12701127 - 12701072
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || |||||| ||||||||||| |||||| |||||||||||    
T  12701127 ggactaaaactaaaacatgtaaaagaataactattgtaagaagaagacttgtatat 12701072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 35749473 - 35749419
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| |||||||| ||||| |||| |||||||| |||||||||||    
T  35749473 gactaaaactaaaacatataaaaagataattattatgagaagatgacttgtatat 35749419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 463
Target Start/End: Original strand, 53583470 - 53583511
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgaga 463  Q
    |||||||||||||||| || ||||||||| ||||||||||||    
T  53583470 gggactaaaactaaaacatgtaaaaggattactattgtgaga 53583511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 18503 - 18558
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  18503 ggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatat 18558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 3729333 - 3729388
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  3729333 ggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatat 3729388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 8159070 - 8159125
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  8159070 ggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatat 8159125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 34766885 - 34766939
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||||||||    
T  34766885 gactaaaactaaaacatgtaaaagaataactattgtgagaagaggacttgtatat 34766939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 38451038 - 38451088
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggactt 472  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  38451038 gggactaaaactaaaacatgtaaaaggataactattgtgagaaggggactt 38451088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 41910219 - 41910273
Alignment:
Q  424 gactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||| || ||||| |||||||||||||| ||||||||||||||||    
T  41910219 gactaaaactaaaacatgtaaaatgataactattgtgaaaagaggacttgtatat 41910273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 39508315 - 39508371
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||| |||||||||||||||| | |||||||||||    
T  39508315 gggactaaaactaaaacatgtaaaagaataactattgtgagaaaaagacttgtatat 39508371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 21020772 - 21020717
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||  |||||||||||||||||||| ||||||| ||||| |||||    
T  21020772 ggactaaaactaaatcatataaaaggataactattgcgagaagaagacttatatat 21020717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 21583938 - 21583883
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||| |||||||||| |||||||| |||||||||||    
T  21583938 ggactaaaactaaaacatgtaaaaagataactattatgagaagatgacttgtatat 21583883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 20815753 - 20815704
Alignment:
Q  429 aaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||| |||| |||||||| ||||||||||||||||| |||||||||||||    
T  20815753 aaacaaaaacatataaaatgataactattgtgagaaaaggacttgtatat 20815704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 9793634 - 9793690
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    |||||||||||||||| || |||||||||||||||||| | ||| ||| ||||||||    
T  9793634 gggactaaaactaaaacatgtaaaaggataactattgtaaaaaggggatttgtatat 9793690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 41929430 - 41929375
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| || ||||||||||||||||| || ||||| ||||| ||||    
T  41929430 ggactaaaactaaaacatgtaaaaggataactattgcgaaaagagaacttgcatat 41929375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 20736157 - 20736207
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggactt 472  Q
    |||||||||||||||| || ||||| |||||||||||||| | ||||||||    
T  20736157 gggactaaaactaaaacatgtaaaatgataactattgtgaaaggaggactt 20736207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 67959 - 67906
Alignment:
Q  425 actaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  67959 actaaaactaaaacatgtaaaaggataactattgttagaagaggacttgtatat 67906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 11409 - 11353
Alignment:
Q  422 gggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||| |||| || | |||||||||||| | ||||||||||||||||||||    
T  11409 gggactaaaacaaaaacatgttaaaggataactactctgagaagaggacttgtatat 11353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 1057 - 1002
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| ||||||||| |||||||||  ||||| | |||||||||||    
T  1057 ggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatat 1002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 1256 - 1311
Alignment:
Q  423 ggactaaaactaaaatatataaaaggataactattgtgagaagaggacttgtatat 478  Q
    ||||||||||||||| ||||||||| |||||||||  ||||| | |||||||||||    
T  1256 ggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatat 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University