View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_11 (Length: 341)
Name: NF11929_low_11
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 45103767 - 45103426
Alignment:
| Q |
1 |
ccagtagcattctgtttagtttttcttactttatcccttttagttcaagctagacaccatcattcacataaaaaacataagcattcacattcacat---- |
96 |
Q |
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| T |
45103767 |
ccagtagcattctgtgtagtttttcttactttatcccttttagttcaagctagacaccatcattcacataaaaaacataagcattcacattcacattcac |
45103668 |
T |
|
| Q |
97 |
--aaatcatatgaaacttcaccaccacagccacctcctcttcatgatgattactacaataataatgcctctggcatttttgatgtaagatcatttggtgc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103667 |
ataaatcatatgaaacttcaccaccacagccacctcctcttcatgatgattactacaataataatgcctctggcatttttgatgtaagatcatttggtgc |
45103568 |
T |
|
| Q |
195 |
aattggagatggaatagaagatgatacagaatcatttaagatggcatgggacactgcatgccaaaatggatcagatgttaatgttatccttgttcctcaa |
294 |
Q |
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| T |
45103567 |
aattggagatggaatagaagatgatacagaatcatttaagatggcatgggacactgcatgccaaaatggatcagatgttaatgttatccttgttcctcaa |
45103468 |
T |
|
| Q |
295 |
ggtttctccttcgtcattcagtcgactatcttctctgctcct |
336 |
Q |
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| T |
45103467 |
ggtttctccttcgtcattcagtcgactatcttcactggtcct |
45103426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 38660242 - 38660373
Alignment:
| Q |
175 |
gatgtaagatcatttggtgcaattggagatggaatagaagatgatacagaatcatttaagatggcatgggacactgcatgccaaaatggatcagatgtta |
274 |
Q |
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||||||||| ||||||||| ||||||||||||||| |||||||| || |||||||| ||||||||||||||||| || |||| || || |||| ||| |
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| T |
38660242 |
gatgtaagaaaatttggtgccattggagatggaataactgatgatactgagtcatttaaaatggcatgggacactgcttgtcaaagtgaattagatctta |
38660341 |
T |
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| Q |
275 |
atgttatccttgttcctcaaggtttctccttc |
306 |
Q |
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||||||| ||||||||| |||||||||||| |
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| T |
38660342 |
atgttatatttgttcctcctggtttctccttc |
38660373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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