View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_13 (Length: 328)
Name: NF11929_low_13
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 47904865 - 47904668
Alignment:
| Q |
58 |
gttaaaaaccaattagaggatgcaaaagataatccgagaagatagaagagaatgacaaggatatttatcctattcaccccacaatccagatccaaaacgg |
157 |
Q |
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| T |
47904865 |
gttaaaaaccaattagaggatgcaaaagataatctgagaagatagaagagaatgacaaggatatttatcctattcaccctacaatccggatccaaaacgg |
47904766 |
T |
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| Q |
158 |
attctaccagaaaacgataagattccaaacagaataatggccatttacccttctccctaatttagctcaaagagttaatgcaatcgattataagaaga |
255 |
Q |
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| T |
47904765 |
attctaccagaaaacgataagattccaaacagaatgatggccatttacacttctccctaatttagctcaaagagttaatgcaatcgattataagaaga |
47904668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 47904644 - 47904610
Alignment:
| Q |
278 |
gaaggattattttcttttctttttgcatatgatta |
312 |
Q |
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| T |
47904644 |
gaaggattattttcttttctttttgcaaatgatta |
47904610 |
T |
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