View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11929_low_14 (Length: 312)

Name: NF11929_low_14
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11929_low_14
NF11929_low_14
[»] chr3 (1 HSPs)
chr3 (10-299)||(9171774-9172063)
[»] chr1 (14 HSPs)
chr1 (25-299)||(9257067-9257345)
chr1 (10-291)||(9466281-9466562)
chr1 (10-299)||(9300365-9300657)
chr1 (19-298)||(9364669-9364948)
chr1 (19-298)||(8962576-8962855)
chr1 (19-298)||(9242096-9242375)
chr1 (19-298)||(9337810-9338086)
chr1 (19-291)||(8939656-8939928)
chr1 (19-298)||(8927223-8927505)
chr1 (178-291)||(9437484-9437597)
chr1 (177-289)||(9236122-9236234)
chr1 (183-289)||(9069631-9069737)
chr1 (178-291)||(9420401-9420514)
chr1 (188-289)||(9125104-9125205)
[»] chr6 (1 HSPs)
chr6 (19-298)||(15909952-15910228)
[»] scaffold0690 (1 HSPs)
scaffold0690 (19-298)||(1878-2154)
[»] chr4 (1 HSPs)
chr4 (186-268)||(27696335-27696417)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 9172063 - 9171774
Alignment:
Q  10 gcataggtagccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctcc 109  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||  | || |||||||| || ||| |||| ||||||||    
T  9172063 gcataggttgccattggatgcaccaaagtcccacgattgccaattttttcgcaattctaaaatctccctcatcatctattgggatttgtatttctcctcc 9171964  T
Q  110 ttcaagcaaactatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagc 209  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  9171963 ttcaagcaaactgtggatccaatctggatacagaacttgaaaattttcttcatttgtggttgtgtttgtattctttcttcctccaacaatttccaatagc 9171864  T
Q  210 aacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcct 299  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  9171863 aacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcct 9171774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 7e-89; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 25 - 299
Target Start/End: Original strand, 9257067 - 9257345
Alignment:
Q  25 ggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaaactatg 124  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||  | |||||||||||||  ||  |||| ||| |||||| ||||||||  ||    
T  9257067 ggatgcaccaaagtcccacgattgccaattttttcgcaattctaaaatctccctcttcatctatagcgatatgtatttcttctcctttaagcaaaccgtg 9257166  T
Q  125 gatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacataccataacta 224  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| ||||| |||||||| |||    
T  9257167 gatccaatctggatatagaacttgaaagttttcttcatttgtggttggatttgtattctttcttcctccaacaatttccaatagcaatataccatagcta 9257266  T
Q  225 tatatatccgactta----taagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcct 299  Q
    |||||||| ||||||    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  9257267 tatatatcagacttataattaagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcct 9257345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 9466281 - 9466562
Alignment:
Q  10 gcataggtagccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctcc 109  Q
    |||||||| |||||||||| |||| |||||| || || |||| |||||| | ||| || |||||  | ||||| || ||||| ||| |||||||||| ||    
T  9466281 gcataggttgccactggatgcaccgaagtccaacaatcgccattttttttggaatcctgaaatctccctcttcgtcaatagggatttgtatgtctccccc 9466380  T
Q  110 ttcaagcaaactatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagc 209  Q
    ||||||||||   ||||||||||||||||| |||||||| || |||||||||  |||||||||||||||||| ||||||||| |||| || ||||||| |    
T  9466381 ttcaagcaaatcgtggatccaatctggatatagaacttgtaaattttcttcacctgtggttgtgtttgtattctttcttcctgcaaccatctccaacaac 9466480  T
Q  210 aacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatccta 291  Q
    ||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  9466481 aacataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagccta 9466562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 9300657 - 9300365
Alignment:
Q  10 gcataggtagccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctc---ttcttcatctataggaattcgtatgtctcc 106  Q
    |||||||| ||||||| || ||||| | |||||| ||||||| |||||| |||||||| ||||| ||   ||||||||||||||| ||| ||||||||||    
T  9300657 gcataggttgccactgaatgcaccataatcccacaattgccattttttttgcaattctgaaatcatcctgttcttcatctatagggatttgtatgtctcc 9300558  T
Q  107 tccttcaagcaaactatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaac 206  Q
    ||||||||  ||||| ||||||||||||||||| | ||||||     || ||||| ||||||||||||| | ||| || ||||| ||||| || |||| |    
T  9300557 tccttcaactaaactgtggatccaatctggatataaaacttgtggacttccttcacttgtggttgtgttcgaattcttccttcccccaaccatctccagc 9300458  T
Q  207 agcaacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcct 299  Q
    | |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  9300457 aacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcct 9300365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 9364948 - 9364669
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaa 118  Q
    |||| ||||||||||| ||||||||  ||||||||||||| | ||||||||||||  | |||||||| ||||| ||  |||| |||||||||||||||||    
T  9364948 gccattggatacaccatagtcccacagttgccaatttttttggaattctaaaatctccctcttcatcaatagggatatgtatatctcctccttcaagcaa 9364849  T
Q  119 actatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacatacca 218  Q
    | | |||||||| ||||||||   |||||| |  ||||||||     |  |||| |||||||| |||||||||||||| ||||||||||  ||||||||     
T  9364848 attgtggatccagtctggatactcaacttgtatattttcttcgccactaattgtttttgtattctttcttcctccaaccatttccaacaataacataccg 9364749  T
Q  219 taactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcc 298  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||| ||||||    
T  9364748 taactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcc 9364669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 8962855 - 8962576
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaa 118  Q
    ||||||| || ||||||||||| || ||||| | ||| || ||||||||| ||||  | |||||||| ||||| ||  |||| ||||| ||||||| |||    
T  8962855 gccactgaatgcaccaaagtccgacaattgctagtttctttgcaattctataatctccatcttcatcaatagggatatgtatatctcccccttcaaacaa 8962756  T
Q  119 actatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacatacca 218  Q
    ||  ||||||||||||||||| | ||||||||| |||||||||| ||||  ||| || ||||| ||||||||||| || || |||| ||||||||| |||    
T  8962755 accgtggatccaatctggatacaaaacttgaaaattttcttcatctgtgactgtcttagtattctttcttcctccgaccatctccagcagcaacattcca 8962656  T
Q  219 taactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcc 298  Q
    || || |||||||| || |||||||||||||| |||||||||| |||||| ||||| |||||||||||||||| ||||||    
T  8962655 tagctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggtgccatgtatcctaatgttcc 8962576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 9242096 - 9242375
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaa 118  Q
    |||| ||||||||||| ||||||||  ||||||||||||| | ||||||||||||  | |||||||| ||||| ||| |||| |||||||||||||||||    
T  9242096 gccattggatacaccatagtcccacagttgccaatttttttggaattctaaaatctccctcttcatcaatagggatttgtatatctcctccttcaagcaa 9242195  T
Q  119 actatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacatacca 218  Q
    | | |||||||| ||||||||   || ||| |  |||||||||      ||||| |||||||| |||||||||||||| || |||||||  ||||||||     
T  9242196 attgtggatccagtctggatactcaatttgtatattttcttcaccacctgttgtttttgtattctttcttcctccaaccatctccaacaataacataccg 9242295  T
Q  219 taactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcc 298  Q
    ||||| |||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| ||||||    
T  9242296 taactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctactgttcc 9242375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 9338086 - 9337810
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaa 118  Q
    |||| ||||||||||| ||||||||  ||||||||||||| | ||||||||||||  | |||||||| ||||| ||| |||| ||||||   ||||||||    
T  9338086 gccattggatacaccatagtcccacagttgccaatttttttggaattctaaaatctccgtcttcatcaatagggatttgtatctctcct---tcaagcaa 9337990  T
Q  119 actatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacatacca 218  Q
    | | |||||||| ||||||||   |||||| |  ||||||||     |  |||| |||||||| |||||||||||||| ||||||||||  ||||||||     
T  9337989 attgtggatccagtctggatactcaacttgtatattttcttcgccactaattgtttttgtattctttcttcctccaaccatttccaacaataacataccg 9337890  T
Q  219 taactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcc 298  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||| ||||||    
T  9337889 taactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcc 9337810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 8939928 - 8939656
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaa 118  Q
    ||||||| || ||||||||||| || || || | ||| || ||||||||||||||  | |||||||| || || ||   || |||||| |||||||  ||    
T  8939928 gccactgaatgcaccaaagtccgacaatcgctagtttctttgcaattctaaaatctccctcttcatcaattgggatatatacgtctccaccttcaaataa 8939829  T
Q  119 actatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacatacca 218  Q
    || |||||||||||||||||| |  |||||||| |||||||||  ||||  ||| || ||||| |||||||||||||| || |||| ||||||||||||     
T  8939828 accatggatccaatctggatacaatacttgaaaattttcttcacctgtgactgtcttagtattctttcttcctccaaccatctccagcagcaacataccg 8939729  T
Q  219 taactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatccta 291  Q
    || || |||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||| ||||    
T  8939728 tagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtacccta 8939656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 8927505 - 8927223
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaa 118  Q
    ||||||| || ||||||||||| || ||||| | |||||| ||||||||| ||||  | |||||||| || || ||   || |||||| |||||||| ||    
T  8927505 gccactgaatgcaccaaagtccgacaattgctagtttttttgcaattctacaatctccctcttcatcaattgggatatatacgtctccaccttcaagtaa 8927406  T
Q  119 actatggatccaatctggatagagaacttgaaagttttcttc---atttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacata 215  Q
    || |||||||||||||||||| |||||||| || ||||||||   |   || ||||| || ||||| |||||||||||||| || || | || |||||||    
T  8927405 accatggatccaatctggatacagaacttggaaattttcttcgccaccagtagttgttttagtattctttcttcctccaaccatctctagcaacaacata 8927306  T
Q  216 ccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcc 298  Q
    || || || |||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |||| ||||||    
T  8927305 ccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaacctaatgttcc 8927223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 9437484 - 9437597
Alignment:
Q  178 tattttttcttcctccaacaatttccaacagcaacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcggg 277  Q
    ||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| || |  ||||| || ||||| |||||||| || ||||| ||||| ||    
T  9437484 tattttttcttcctccaaccatttcaagcagtaacatcccataactatatatgtcagctttatacgatacatttccaaagttcctcgaaaacacttcagg 9437583  T
Q  278 tgccatgtatccta 291  Q
    ||| ||||| ||||    
T  9437584 tgcaatgtaaccta 9437597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 9236122 - 9236234
Alignment:
Q  177 gtattttttcttcctccaacaatttccaacagcaacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgg 276  Q
    ||||| |||||||| ||||| || || | || ||||||||| || ||||| ||||| ||||||||||| ||||| || |||||||| || |||||||| |    
T  9236122 gtattctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcag 9236221  T
Q  277 gtgccatgtatcc 289  Q
    |||| ||||||||    
T  9236222 gtgcaatgtatcc 9236234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 9069631 - 9069737
Alignment:
Q  183 tttcttcctccaacaatttccaacagcaacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgcca 282  Q
    |||||||||||||| ||||| | || |||||| |||||||| |||||||| ||||||  ||| ||||| ||||| |||| ||| |  |||||||||||||    
T  9069631 tttcttcctccaaccatttctagcaacaacattccataactgtatatatcagacttaagagaaacatttccaaaatttcgagacactacttcgggtgcca 9069730  T
Q  283 tgtatcc 289  Q
    | |||||    
T  9069731 tatatcc 9069737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 9420401 - 9420514
Alignment:
Q  178 tattttttcttcctccaacaatttccaacagcaacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcggg 277  Q
    ||||||||||||||||||| ||||| |  || ||||| |||||||||||||| || |  ||||| || ||||| |||||||| || ||||| ||||| ||    
T  9420401 tattttttcttcctccaaccatttcaagaagtaacatcccataactatatatgtcagctttatacgatacatttccaaagttcctcgaaaacacttcagg 9420500  T
Q  278 tgccatgtatccta 291  Q
    ||| ||||| ||||    
T  9420501 tgcaatgtaaccta 9420514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 9125104 - 9125205
Alignment:
Q  188 tcctccaacaatttccaacagcaacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtat 287  Q
    ||||||||| | ||||| || |||||| ||||||||||| ||||| ||||||  ||| ||||| ||||| ||||  || |||||||| |||||||| |||    
T  9125104 tcctccaaccaattccagcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatat 9125203  T
Q  288 cc 289  Q
    ||    
T  9125204 cc 9125205  T

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Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 15909952 - 15910228
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctcttcttcatctataggaattcgtatgtctcctccttcaagcaa 118  Q
    |||| ||||||||||| || || ||| ||||||||||||| | ||||||||||||  | |||||||| ||||| ||| |||| ||||||   |||| |||    
T  15909952 gccattggatacaccacagaccgacggttgccaatttttttggaattctaaaatctccctcttcatcaatagggatttgtatatctcct---tcaaacaa 15910048  T
Q  119 actatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacatacca 218  Q
    | | |||||||| ||||||||   |||||| | |||||| |||    | ||||| |||||||| |||||||||||||| || |||||||  ||||||||     
T  15910049 attgtggatccagtctggatactcaacttgtatgttttcatcaccacttgttgtttttgtattctttcttcctccaaccatctccaacaataacataccg 15910148  T
Q  219 taactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcc 298  Q
    ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| ||||||    
T  15910149 taactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttcc 15910228  T

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Target: scaffold0690 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 2154 - 1878
Alignment:
Q  19 gccactggatacaccaaagtcccacgattgccaattttttggcaattctaaaatcctct-tcttcatctataggaattcgtatgtctcctccttcaagca 117  Q
    |||| ||||||||||| || || ||| ||||||||||||| | |||||||||||| ||| |||||||| ||||| ||| |||| ||||||   |||| ||    
T  2154 gccattggatacaccacagaccgacggttgccaatttttttggaattctaaaatc-tctctcttcatcaatagggatttgtatatctcct---tcaaaca 2059  T
Q  118 aactatggatccaatctggatagagaacttgaaagttttcttcatttgtggttgtgtttgtattttttcttcctccaacaatttccaacagcaacatacc 217  Q
    || | |||||||| ||||||||   |||||| | |||||| |||    | ||||| || ||||| |||||||||||||| || |||||||  ||||||||    
T  2058 aattgtggatccagtctggatactcaacttgtatgttttcatcaccacttgttgttttcgtattctttcttcctccaaccatctccaacaataacatacc 1959  T
Q  218 ataactatatatatccgacttataagagacattgccaaagtttctagaaaaaacttcgggtgccatgtatcctattgttcc 298  Q
     ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| ||||||    
T  1958 gtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttcc 1878  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 27696417 - 27696335
Alignment:
Q  186 cttcctccaacaatttccaacagcaacataccataactatatatatccgacttataagagacattgccaaagtttctagaaaa 268  Q
    ||||||||||| ||||| |  |||| ||| ||||||||||| | ||| |||||||| || ||| |||||||||||||||||||    
T  27696417 cttcctccaaccatttcaagaagcagcatcccataactataaacatctgacttataggatacaatgccaaagtttctagaaaa 27696335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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