View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11929_low_16 (Length: 293)
Name: NF11929_low_16
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 23903 - 23653
Alignment:
| Q |
36 |
tttttattagcttgaaataagatttacaaagtttcaactctcaagacactctacaaaagggtgatagtattgtttcatgtttggggttaccagaatgttt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23903 |
tttttattagcttgaaataagatttacaaagtttcaactctcaagacactctacaaaagggtgatagtattgtttaatgtttggggttaccagaatgttt |
23804 |
T |
|
| Q |
136 |
tatgatgaccaagcaattaattatttct-agta--nnnnnnnctttctagtaatctaatagctagaatttcattataaaggtgaataaacaggaaattca |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||| | |
|
|
| T |
23803 |
tatgttgaccaagcaattaattatttctcagtatttttttttctttttagtaatctaatagctagaattttattataaaggtgaataaacaaaaaatcta |
23704 |
T |
|
| Q |
233 |
ggattcaaacctcgacctctacatattcaagtgcactgtccctaccatctg |
283 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23703 |
ggattcaaacatcgacctctacatattcaagtgcactgtccctaccatctg |
23653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 14102 - 13994
Alignment:
| Q |
2 |
tttagagtgttgcatgttttatcatttcaatccctttttattagcttgaaataagatttacaaagtttcaactctcaagacactctacaaaagggtgata |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
14102 |
tttagagtgttgcatcttttatcatttcaagcccttattgttagcttgaaataagatttacaaagtttcaactcttaagacactctacaaaaggatgaag |
14003 |
T |
|
| Q |
102 |
gtattgttt |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
14002 |
gtattgttt |
13994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 2960 - 2857
Alignment:
| Q |
178 |
tctagtaatctaatagctagaatttca--ttataaaggtgaataaacaggaaattcaggattcaaacctcgacctctacatattcaagtgcactgtccct |
275 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| ||| |||| |||| |||| |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
2960 |
tctagtaatctaatggctagaatttcaccttataacggtaaatagacagagaatttaggattcaaacctcgacctcaacatattccagtgcactgtccct |
2861 |
T |
|
| Q |
276 |
acca |
279 |
Q |
| |
|
|||| |
|
|
| T |
2860 |
acca |
2857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 13916 - 13815
Alignment:
| Q |
178 |
tctagtaatctaatagctagaatttcattataaaggtgaataaacaggaaattcaggattcaaacctcgacctctacatattcaagtgcactgtccctac |
277 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||||||| |||| | |||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
13916 |
tctagtaatctagaggctagaatttcaccttaacggtgaataaacagggaatttaagattcaaacctcgacctcaacatattccagtgcactgtcgctac |
13817 |
T |
|
| Q |
278 |
ca |
279 |
Q |
| |
|
|| |
|
|
| T |
13816 |
ca |
13815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 3132 - 3068
Alignment:
| Q |
2 |
tttagagtgttgcatgttttatcatttcaatccctttttattagcttgaaataagatttacaaag |
66 |
Q |
| |
|
||||||||||| ||| ||| |||||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
3132 |
tttagagtgttccatctttcatcatttcaagcccttattgttagcttgaaataagatttacaaag |
3068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University