View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_17 (Length: 292)
Name: NF11929_low_17
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 42273772 - 42274030
Alignment:
| Q |
18 |
atacattggaccgcatgaatcagccttgttattgtaaattcgagtctgcaatgaattcaaacagttaaccggaaaaaattattatcatatcaatttatct |
117 |
Q |
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| T |
42273772 |
atacattggaccgcatgaatcagccttgttattgtaaattcgagtctgcaatgaattcaaacagttaaccgaaaaaaattattatcatatcaatttatct |
42273871 |
T |
|
| Q |
118 |
atgtcaaaatgatatgaataaacaaaacaatagtagtgaaaaacatgacatacaaatcgttcatacgcatgaacatgtccagcaaaaaccaaatcaacac |
217 |
Q |
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| T |
42273872 |
gtgtcaaaatgatatgaataaacaaaacaatagtagtgaaaaacatgacatacaaatcgttcatacgcatgaacatgtccagcaaaaaccaaatcaacac |
42273971 |
T |
|
| Q |
218 |
gagccttaaaaagcaactcttccatagcttgtctcatggattcaccttcaccttgatgt |
276 |
Q |
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| T |
42273972 |
gagccttaaaaagcaactcttccatagcttgtctcatggattcaccttcaccttgatgt |
42274030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 26276346 - 26276232
Alignment:
| Q |
162 |
atgacatacaaatcgttcatacgcatgaacatgtccagcaaaaaccaaatcaacacgagccttaaaaagcaactcttccatagcttgtctcatggattca |
261 |
Q |
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|||||||||||| ||||| || ||||| ||||| || | ||||||||| ||||||||||||| | ||||||| |||||||| || |||||||| |||| |
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| T |
26276346 |
atgacatacaaagcgttcgtatgcatggacatgccctgaaaaaaccaagtcaacacgagcctcataaagcaattcttccatggcctgtctcatttcttca |
26276247 |
T |
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| Q |
262 |
ccttcaccttgatgt |
276 |
Q |
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| T |
26276246 |
ccttcaccttcatgt |
26276232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 40335502 - 40335544
Alignment:
| Q |
175 |
cgttcatacgcatgaacatgtccagcaaaaaccaaatcaacac |
217 |
Q |
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|||||||| ||||||||||||||||||| ||| |||||||||| |
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| T |
40335502 |
cgttcataagcatgaacatgtccagcaagaactaaatcaacac |
40335544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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