View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_18 (Length: 286)
Name: NF11929_low_18
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 3021320 - 3021583
Alignment:
| Q |
19 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021320 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
3021419 |
T |
|
| Q |
119 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccagtattagtattnnnnnnngtcaacaattagcataaataagagctaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3021420 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccagtattagtattaaaaaaagtcaacaattagcataaataagagctaat |
3021519 |
T |
|
| Q |
219 |
gctaatcttttataattaagcatggtcctaattcaaagtctttatactttctctg-ctcctcct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3021520 |
gctaatcttttataattaagcatggtcctaattcaaagtctttatactttctctgtctcctcct |
3021583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 18374979 - 18375242
Alignment:
| Q |
19 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18374979 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
18375078 |
T |
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| Q |
119 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccagtattagtattnnnnnnngtcaacaattagcataaataagagctaat |
218 |
Q |
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| T |
18375079 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccagtattagtattaaaaaaagtcaacaattagcataaataagagctaat |
18375178 |
T |
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| Q |
219 |
gctaatcttttataattaagcatggtcctaattcaaagtctttatactttctctg-ctcctcct |
281 |
Q |
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| T |
18375179 |
gctaatcttttataattaagcatggtcctaattcaaagtctttatactttctctgtctcctcct |
18375242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 18365152 - 18365368
Alignment:
| Q |
19 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18365152 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
18365251 |
T |
|
| Q |
119 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccagtattagtattnnnnnnngtcaacaattagcataaataagagctaat |
218 |
Q |
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| T |
18365252 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccggtattagtattaaaaaaagtcaacaattagcataaataagagctaat |
18365351 |
T |
|
| Q |
219 |
gctaatcttttataatt |
235 |
Q |
| |
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||||||||||||||||| |
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| T |
18365352 |
gctaatcttttataatt |
18365368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 18370416 - 18370632
Alignment:
| Q |
19 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18370416 |
tgaaccaggtacatccgaagctaagacttgttttttcacagattaaaccaactccttggaattcttaactagtattatctttggttttcatattctattt |
18370515 |
T |
|
| Q |
119 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccagtattagtattnnnnnnngtcaacaattagcataaataagagctaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18370516 |
attttttcatgatttgttttccaatttaatcaggattcattaataagaaaccggtattagtattaaaaaaagtcaacaattagcataaataagagctaat |
18370615 |
T |
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| Q |
219 |
gctaatcttttataatt |
235 |
Q |
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||||||||||||||||| |
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| T |
18370616 |
gctaatcttttataatt |
18370632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 18365639 - 18365694
Alignment:
| Q |
227 |
tttataattaagcatggtcctaattcaaagtctttatactttctctg-ctcctcct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18365639 |
tttataattaagcatggtcctaattcaaagtctttatactttctctgtctcctcct |
18365694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 18370903 - 18370958
Alignment:
| Q |
227 |
tttataattaagcatggtcctaattcaaagtctttatactttctctg-ctcctcct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18370903 |
tttataattaagcatggtcctaattcaaagtctttatactttctctgtctcctcct |
18370958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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