View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11929_low_2 (Length: 564)

Name: NF11929_low_2
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11929_low_2
NF11929_low_2
[»] chr7 (7 HSPs)
chr7 (18-550)||(41764375-41764902)
chr7 (18-342)||(41756433-41756757)
chr7 (511-550)||(37703283-37703322)
chr7 (508-550)||(4583256-4583298)
chr7 (486-544)||(48928057-48928115)
chr7 (508-545)||(10481947-10481984)
chr7 (486-550)||(12390409-12390473)
[»] chr1 (3 HSPs)
chr1 (18-95)||(26974053-26974130)
chr1 (259-341)||(26973807-26973889)
chr1 (485-542)||(19899521-19899578)
[»] chr4 (7 HSPs)
chr4 (487-550)||(28002772-28002835)
chr4 (504-550)||(25700859-25700905)
chr4 (508-550)||(25184475-25184517)
chr4 (504-550)||(32579808-32579854)
chr4 (486-542)||(6864405-6864461)
chr4 (478-550)||(30002418-30002490)
chr4 (510-550)||(32592446-32592486)
[»] chr2 (5 HSPs)
chr2 (487-542)||(26357947-26358002)
chr2 (504-550)||(41465863-41465909)
chr2 (487-550)||(4167284-4167347)
chr2 (504-550)||(19289118-19289164)
chr2 (510-542)||(35959262-35959294)
[»] chr8 (5 HSPs)
chr8 (487-545)||(33906576-33906634)
chr8 (504-550)||(35459494-35459540)
chr8 (486-546)||(1205292-1205352)
chr8 (508-550)||(43643382-43643424)
chr8 (511-539)||(18259451-18259479)
[»] chr5 (2 HSPs)
chr5 (504-550)||(33908594-33908640)
chr5 (487-550)||(40133747-40133810)
[»] chr3 (5 HSPs)
chr3 (504-550)||(48355294-48355340)
chr3 (277-342)||(36806094-36806159)
chr3 (289-343)||(49301577-49301631)
chr3 (489-542)||(13498678-13498731)
chr3 (277-342)||(36515067-36515132)
[»] chr6 (1 HSPs)
chr6 (483-550)||(20768444-20768511)


Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Original strand, 41764375 - 41764902
Alignment:
Q  18 caaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactccatggaaggaattttcatcaatcaaatggag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41764375 caaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactccatggaaggaattttcatcaatcaaatggag 41764474  T
Q  118 atgaatgataaattcataacaagagaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgtacgagact 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41764475 atgaatgataaattcataacaaaagaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgtacgagact 41764574  T
Q  218 ctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcattt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41764575 ctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcattt 41764674  T
Q  318 catacttgcttgccatgattgggtaaatctatcactagccnnnnnnncttaaaaatcttagtacatgcattctagtctagagtaagtgaacacttcttag 417  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||     |||||||||||||||||||||||||    
T  41764675 catacttgcttgccatgattgggtaaatctatcactagcatttttttcttaaaaatcttagtacatgcat-----tctagagtaagtgaacacttcttag 41764769  T
Q  418 cattttcctaaaagatatcatacatacatttattgtagtcaannnnnnnnattctatccattaattaatgggagcttccacactggagttagaaaattga 517  Q
    ||||||| ||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||| ||| ||  ||||||  | |||||||    
T  41764770 cattttcttaaaagatatcatacatacatttattgtagtcaattttttttattctatcaattaattaatgggagtttctacggtggagtcgggaaattga 41764869  T
Q  518 cttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||||||||||||||||||||| ||||    
T  41764870 cttttttgaaaaggttaattttgatcttaatgt 41764902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 41756433 - 41756757
Alignment:
Q  18 caaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactccatggaaggaattttcatcaatcaaatggag 117  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |  |||||||||||||||||||| ||||||| ||   || |||    
T  41756433 caaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagtatatactccatggaaggaaatttcatccatgctattgag 41756532  T
Q  118 atgaatgataaattcataacaagagaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgtacgagact 217  Q
    |||||||||  |||   |||||||||||| |||||||||||||||||||||||| ||| |||||| |||| ||||||||| | |||||||||||| || |    
T  41756533 atgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggcaaagatggtccaatttgtctatgtacgcgatt 41756632  T
Q  218 ctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcattt 317  Q
    ||| || || |   | | |||||| |||| ||| ||| || ||||||||  |||||||||||||||||| |||||||||||| | |||||||||||||||    
T  41756633 ctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatcccttttggaaccgaagccttggagctgatcattt 41756732  T
Q  318 catacttgcttgccatgattgggta 342  Q
    ||| ||| |||||||||||||||||    
T  41756733 catgctttcttgccatgattgggta 41756757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 550
Target Start/End: Original strand, 37703283 - 37703322
Alignment:
Q  511 aaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  37703283 aaattgacttttttgaaaaagttaattttgatcttaatgt 37703322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 550
Target Start/End: Complemental strand, 4583298 - 4583256
Alignment:
Q  508 agaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||    
T  4583298 agaaaattgacttttttgaaaaagttaattttaatcttaatgt 4583256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 544
Target Start/End: Original strand, 48928057 - 48928115
Alignment:
Q  486 tgggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatct 544  Q
    |||||||||| ||  || ||||||||||||||||||||| ||||  |||||||||||||    
T  48928057 tgggagcttctacggtgcagttagaaaattgacttttttaaaaaaattaattttgatct 48928115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 545
Target Start/End: Complemental strand, 10481984 - 10481947
Alignment:
Q  508 agaaaattgacttttttgaaaaggttaattttgatctt 545  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  10481984 agaaaactgacttttttgaaaaagttaattttgatctt 10481947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 12390409 - 12390473
Alignment:
Q  486 tgggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||| ||  || ||| || ||||||||||||||| ||| ||||||||||||||| ||||    
T  12390409 tgggagcttctacggtgaagtcaggaaattgacttttttggaaaagttaattttgatcttaatgt 12390473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 26974130 - 26974053
Alignment:
Q  18 caaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactccatggaagg 95  Q
    ||||||||| || |||||||||||||||||||| ||||| ||  |||||||||||| |   |||||||||||||||||    
T  26974130 caaagtattcgtctacgaagaaggggagcctccggtttttcacaatggaccttgcaaaagcatatactccatggaagg 26974053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 26973889 - 26973807
Alignment:
Q  259 atcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggt 341  Q
    ||||||||| || | | ||||||||| ||||||||  |||| | |||||||||||||||||| || ||||||||||| |||||    
T  26973889 atcaatgtcattgctggaaaatatccatattggaatagaagccttggagctgatcatttcatgctagcttgccatgactgggt 26973807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 542
Target Start/End: Original strand, 19899521 - 19899578
Alignment:
Q  485 atgggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgat 542  Q
    ||||||||||| ||| || |||||| ||| ||||||||||| ||| ||||||||||||    
T  19899521 atgggagcttctacagtgcagttaggaaactgacttttttggaaaagttaattttgat 19899578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 28002772 - 28002835
Alignment:
Q  487 gggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    ||||||||| |||||| ||| || ||| ||||||||||||||| ||||||||||||||| ||||    
T  28002772 gggagcttctacactgcagtcaggaaactgacttttttgaaaaagttaattttgatcttaatgt 28002835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 550
Target Start/End: Original strand, 25700859 - 25700905
Alignment:
Q  504 agttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  25700859 agttaggaaattgacttttttgaaaaagttaattttgatcttaatgt 25700905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 550
Target Start/End: Complemental strand, 25184517 - 25184475
Alignment:
Q  508 agaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||    
T  25184517 agaaaactgacttttttgaaaaagttaattttgatcttaatgt 25184475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 550
Target Start/End: Complemental strand, 32579854 - 32579808
Alignment:
Q  504 agttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||| |||||||||||||||  |||||||||||||| ||||    
T  32579854 agttagaaaactgacttttttgaaaaaattaattttgatcttaatgt 32579808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 6864461 - 6864405
Alignment:
Q  486 tgggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgat 542  Q
    |||||||||| ||  || ||| |||||| ||||||||||||||| ||||||||||||    
T  6864461 tgggagcttctacggtgcagtcagaaaactgacttttttgaaaaagttaattttgat 6864405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 30002418 - 30002490
Alignment:
Q  478 ttaattaatgggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||| ||||||||||| ||  || |||||  |||||||||||| |||||| ||||||||| ||||| ||||    
T  30002418 ttaatttatgggagcttctacggtgcagttatgaaattgacttttctgaaaaagttaattttaatcttaatgt 30002490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Complemental strand, 32592486 - 32592446
Alignment:
Q  510 aaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||||||||||||| ||||||||| ||||| ||||    
T  32592486 aaaattgacttttttgaaaaagttaattttaatcttaatgt 32592446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 26358002 - 26357947
Alignment:
Q  487 gggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgat 542  Q
    ||||||||| ||| || ||||||||||||||||||||| |||| ||||||||||||    
T  26358002 gggagcttctacattgcagttagaaaattgacttttttaaaaaagttaattttgat 26357947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 550
Target Start/End: Complemental strand, 41465909 - 41465863
Alignment:
Q  504 agttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  41465909 agttagaaaactgacttttttgaaaaagttaattttgatcttaatgt 41465863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 550
Target Start/End: Complemental strand, 4167347 - 4167284
Alignment:
Q  487 gggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    ||||||||| ||  || ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  4167347 gggagcttctacggtgcagtcagaaaattgacttttttgaaaaagttaattttaatcttaatgt 4167284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 550
Target Start/End: Original strand, 19289118 - 19289164
Alignment:
Q  504 agttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  19289118 agttaggaaactgacttttttgaaaaagttaattttgatcttaatgt 19289164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 542
Target Start/End: Complemental strand, 35959294 - 35959262
Alignment:
Q  510 aaaattgacttttttgaaaaggttaattttgat 542  Q
    |||||||||||||||||||| ||||||||||||    
T  35959294 aaaattgacttttttgaaaaagttaattttgat 35959262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 545
Target Start/End: Complemental strand, 33906634 - 33906576
Alignment:
Q  487 gggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatctt 545  Q
    ||||||||| ||| || ||| |||||| ||||||||||||||| |||||||||||||||    
T  33906634 gggagcttctacagtgcagtcagaaaactgacttttttgaaaaagttaattttgatctt 33906576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 550
Target Start/End: Original strand, 35459494 - 35459540
Alignment:
Q  504 agttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  35459494 agttagaaaactgacttttttgaaaaagttaattttgatcttaatgt 35459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 546
Target Start/End: Complemental strand, 1205352 - 1205292
Alignment:
Q  486 tgggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatcttg 546  Q
    |||||||||| ||  || ||| ||||||||||||||||| |||| ||||||||||||||||    
T  1205352 tgggagcttctacggtgtagtcagaaaattgacttttttaaaaaagttaattttgatcttg 1205292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 550
Target Start/End: Original strand, 43643382 - 43643424
Alignment:
Q  508 agaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||    
T  43643382 agaaaactgacttttttgaaaaagttaattttgatcttaatgt 43643424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 539
Target Start/End: Complemental strand, 18259479 - 18259451
Alignment:
Q  511 aaattgacttttttgaaaaggttaatttt 539  Q
    |||||||||||||||||||||||||||||    
T  18259479 aaattgacttttttgaaaaggttaatttt 18259451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 550
Target Start/End: Complemental strand, 33908640 - 33908594
Alignment:
Q  504 agttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  33908640 agttagaaaactgacttttttgaaaaagttaattttgatcttaatgt 33908594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 550
Target Start/End: Complemental strand, 40133810 - 40133747
Alignment:
Q  487 gggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    ||||||||| ||  || ||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  40133810 gggagcttctacggtgcagtcagaaaattgacttttttgaaaaagttaattttaatcttaatgt 40133747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 550
Target Start/End: Complemental strand, 48355340 - 48355294
Alignment:
Q  504 agttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  48355340 agttaggaaattgacttttttgaaaaagttaattttgatcttaatgt 48355294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 36806094 - 36806159
Alignment:
Q  277 aaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta 342  Q
    |||||| | ||||||||  ||||| ||||||||||||||||||| ||| |||| ||||||||||||    
T  36806094 aaatatgcatattggaatagaagttatggagctgatcatttcatgctttcttgtcatgattgggta 36806159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 49301577 - 49301631
Alignment:
Q  289 tggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggtaa 343  Q
    |||||| ||| |||||| ||||| || ||||| ||||||||||||||||||||||    
T  49301577 tggaacagaactcatggtgctgaccacttcatgcttgcttgccatgattgggtaa 49301631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 542
Target Start/End: Complemental strand, 13498731 - 13498678
Alignment:
Q  489 gagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgat 542  Q
    ||||||| ||| || ||| ||||||||||||||||| |||| ||||||||||||    
T  13498731 gagcttctacagtgtagtcagaaaattgacttttttaaaaaagttaattttgat 13498678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 36515132 - 36515067
Alignment:
Q  277 aaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta 342  Q
    |||||| | ||||||||  ||||| |||||||||| |||||||| ||| |||| ||||||||||||    
T  36515132 aaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggta 36515067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 550
Target Start/End: Complemental strand, 20768511 - 20768444
Alignment:
Q  483 taatgggagcttccacactggagttagaaaattgacttttttgaaaaggttaattttgatcttgatgt 550  Q
    ||||||||||||| ||  || ||| || ||||||| ||||||||||| ||||||||||||||| ||||    
T  20768511 taatgggagcttctacggtgcagtcaggaaattgatttttttgaaaaagttaattttgatcttaatgt 20768444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University