View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_21 (Length: 271)
Name: NF11929_low_21
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_21 |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 61 - 216
Target Start/End: Original strand, 9238408 - 9238562
Alignment:
| Q |
61 |
gttaaaagttccctccaacccttttgggcctacaacttcagcaaataaaactaccattaatgttgcagaacgtttgaatttggagctggaagtgattcaa |
160 |
Q |
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| T |
9238408 |
gttaaaagttccctccaacccttttggatctacagcttcagcaaataaaactactattaatgttgcagaacgtttgaatttggagctggaagcgattcaa |
9238507 |
T |
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| Q |
161 |
gaaatagattagatattttgattgtaaaaatatttattgtcaatggcttttcattg |
216 |
Q |
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| T |
9238508 |
gaaatagattagata-tttgaatgtgaaaatatttattgtcaattgcttttaattg |
9238562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 9466288 - 9466113
Alignment:
| Q |
1 |
acctatgcatcgtccgactatgaaaattgttatgcaaatgctacaaggagatggagacaagttaaaagttccctccaacccttttgggcctacaacttca |
100 |
Q |
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| T |
9466288 |
acctatgcatcgtccatccatgaaaactgtgatacaaatgctacaaggtgatggagacaagttaaaagtccccagcaatccttttgggcctacaacttca |
9466189 |
T |
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| Q |
101 |
gcaaataaaactaccattaatgttgcagaacgtttgaatttggagctggaagtgattcaagaaatagattagatat |
176 |
Q |
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| T |
9466188 |
actaattcaactgctagtactgttacaaagcgtataaatttcgagctagaagttattcaagaattagattaaatat |
9466113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 9338093 - 9338263
Alignment:
| Q |
6 |
tgcatcgtccgactatgaaaattgttatgcaaatgctacaaggagatggagacaagttaaaagttccctccaacccttttgggcctacaacttcagcaaa |
105 |
Q |
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| T |
9338093 |
tgcatcgtccgacaatgaaatctgtgatgcaaatgctccaaggagagggggacaagttaaaagtgcctactaatccgtttggaccaacaactacaactaa |
9338192 |
T |
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| Q |
106 |
taaaactaccattaatgttgcagaacgtttgaatttggagctggaagtgattcaagaaatagattagatat |
176 |
Q |
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| T |
9338193 |
taaaaatgttaatattgttgcagaacgtatgaatttggagctggaggtgattgaagaattagaatagatat |
9338263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 9300650 - 9300823
Alignment:
| Q |
1 |
acctatgcatcgtccgactatgaaaattgttatgcaaatgctacaaggagatggagacaagttaaaagttccctccaacccttttgggcctacaacttca |
100 |
Q |
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| T |
9300650 |
acctatgcatcgtccgtccatgaaaactgtgttgcaaatgttacaaggagagggagacaagctaaaagttccacgcaatccttttgggccatcgacttcc |
9300749 |
T |
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| Q |
101 |
gcaaataaaactaccattaatgttgcagaacgtttgaatttggagctggaagtgattcaagaaatagattagat |
174 |
Q |
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| T |
9300750 |
accaatacaactgctagtatcgtttcaaaacctatgagtttggagctggaagtgattaaagagttagattagat |
9300823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 9257068 - 9256983
Alignment:
| Q |
2 |
cctatgcatcgtccgactatgaaaattgttatgcaaatgctacaaggagatggagacaagttaaaagttccctccaacccttttgg |
87 |
Q |
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| T |
9257068 |
cctatgcatcatcggtctatgaaagatgtgatgcaaatgctgaaaggagatggagacaacttaaaagtttcctgcaacccttttgg |
9256983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 9364955 - 9365117
Alignment:
| Q |
6 |
tgcatcgtccgactatgaaaattgttatgcaaatgctacaaggagatggagacaagttaaaagttccctccaacccttttgggcctacaacttcagcaaa |
105 |
Q |
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|||| |||||||| |||||| ||| || |||||||| |||||||| || |||||||||||||| || | || || || || || |||||| || | || |
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| T |
9364955 |
tgcaccgtccgacaatgaaatatgtgatacaaatgcttcaaggagagggggacaagttaaaagtgcctactaatccgttcggaccaacaactacaactaa |
9365054 |
T |
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| Q |
106 |
taaaactaccattaatgttgcagaacgtttgaatttggagctggaagtgattcaagaaataga |
168 |
Q |
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| T |
9365055 |
tacaaatgctaatattgttgcagaacgtatgaatttggagctggaggtgattgaagaattaga |
9365117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 9338700 - 9338755
Alignment:
| Q |
121 |
tgttgcagaacgtttgaatttggagctggaagtgattcaagaaatagattagatat |
176 |
Q |
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| T |
9338700 |
tgttgcagaacgtatgaatttggagctggaggtgattgaagaattagaatagatat |
9338755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 8927512 - 8927590
Alignment:
| Q |
6 |
tgcatcgtccgactatgaaaattgttatgcaaatgctacaaggagatggagacaagttaaaagttccctccaacccttt |
84 |
Q |
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| T |
8927512 |
tgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcccaccaatccttt |
8927590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9172056 - 9172276
Alignment:
| Q |
1 |
acctatgcatcgtccgactatgaaaattgttatgcaaatgctacaaggagatggagacaagttaaaagttccctccaacccttttgggcctacaacttca |
100 |
Q |
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| T |
9172056 |
acctatgcatcgtccgtctatgaaaactgtgatgcaaatgctgcaaggagatggagacaagttacaagttccttcaaacccttatggacctacaacttca |
9172155 |
T |
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| Q |
101 |
gcaaataaaactaccattaatgttg---cagaacgtttgaatttggagctggaagtgattcaagaaatagattagatattttgattgtaaaaata----t |
193 |
Q |
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| T |
9172156 |
tctaatacaactactaatattgttgcaccaccacctatgaatttgcatcttgaagtgattcaggaaatagattaaatagtttgattgtataaataaattt |
9172255 |
T |
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| Q |
194 |
ttattgtcaatggcttttcat |
214 |
Q |
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| T |
9172256 |
ttattgtcaatgtcttgtcat |
9172276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 2276 - 2331
Alignment:
| Q |
121 |
tgttgcagaacgtttgaatttggagctggaagtgattcaagaaatagattagatat |
176 |
Q |
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| T |
2276 |
tgttgcagaacgtatgaatttggaactggaggtgattgaagaaatagaatagatat |
2331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 15909830 - 15909775
Alignment:
| Q |
121 |
tgttgcagaacgtttgaatttggagctggaagtgattcaagaaatagattagatat |
176 |
Q |
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| T |
15909830 |
tgttgcagaacgtataaatttggaactggaggtgattgaagaaatagaatagatat |
15909775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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