View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_23 (Length: 259)
Name: NF11929_low_23
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 51301967 - 51301734
Alignment:
| Q |
10 |
ttgaatgtgcttctgacacatgtttgactgtggttgatgttttcattattgctgacatttggaatttttaggtatcgatgtcttgatctaaggaggcagc |
109 |
Q |
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| T |
51301967 |
ttgaatgtgcttctgacacatgtttgactgtggttgatgttttcattattgctgacatttggaatttttaggtatcgatgtcttgatctaaggaggcagc |
51301868 |
T |
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| Q |
110 |
gattgaattctaacatgttgctgcggcataatgtggttaaactcatacggagatatctagaagacatacatggttttgtggaggtactatccagtaggtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51301867 |
aattgaattctaacatgttgctgcggcataatgtggttaaactcatacgaagatatctagaagacatacatggttttgtggaggtactatccagtaggtt |
51301768 |
T |
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| Q |
210 |
catcatttgaattttcgagtctcttgcacatcgt |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
51301767 |
catcatttgaattttcgagtctcttgcacatcgt |
51301734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 50015879 - 50015707
Alignment:
| Q |
71 |
gaatttttaggtatcgatgtcttgatctaaggaggcagcgattgaattctaacatgttgctgcggcataatgtggttaaactcatacggagatatctaga |
170 |
Q |
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| T |
50015879 |
gaatttttaggtatcgatatcttgatctaaggaggcaacaaatgaattctaacatgttgctgcggcataatgtggttaaactcatgcgaagatatctaga |
50015780 |
T |
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| Q |
171 |
agacatacatggttttgtggaggtactatccagtaggttcatcatttgaattttcgagtctcttgcacatcgt |
243 |
Q |
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| T |
50015779 |
agacatacatggttttgtggaggtactatccagtaggttcatcttttgaatttttgagtctattgcacatcgt |
50015707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 18854518 - 18854369
Alignment:
| Q |
75 |
ttttaggtatcgatgtcttgatctaaggaggcagcgattgaattctaacatgttgctgcggcataatgtggttaaactcatacggagatatctagaagac |
174 |
Q |
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||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18854518 |
ttttaggtatcgatgtcttgatctaaggaagcaacaaatgaattctaacatattgctgcggcataatgtggttaaactcatacgaagatatctagaagac |
18854419 |
T |
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| Q |
175 |
atacatggttttgtggaggtactatccagtaggttcatcatttgaatttt |
224 |
Q |
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| T |
18854418 |
atacatggttttgccgaggtactatccagtaggttcatcatttgaatttt |
18854369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 18843050 - 18842901
Alignment:
| Q |
75 |
ttttaggtatcgatgtcttgatctaaggaggcagcgattgaattctaacatgttgctgcggcataatgtggttaaactcatacggagatatctagaagac |
174 |
Q |
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||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
18843050 |
ttttaggtatcgatgtcttgatctaaggaagcaacaaatgaattctaacatattgctgcgccataatgtggttaaactcatacgaagatatctagaagac |
18842951 |
T |
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| Q |
175 |
atacatggttttgtggaggtactatccagtaggttcatcatttgaatttt |
224 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
18842950 |
atacatggttttgtcgaggtactatctagtaggttcatcatttgaatttt |
18842901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 50015989 - 50015943
Alignment:
| Q |
10 |
ttgaatgtgcttctgacacatgtttgactgtggttgatgttttcatt |
56 |
Q |
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|||||||| || ||||||||||||||| ||||||||||||||||||| |
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| T |
50015989 |
ttgaatgttctgctgacacatgtttgattgtggttgatgttttcatt |
50015943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 18854631 - 18854585
Alignment:
| Q |
10 |
ttgaatgtgcttctgacacatgtttgactgtggttgatgttttcatt |
56 |
Q |
| |
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|||||| |||| |||||| |||||||| ||||||||||||||||||| |
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| T |
18854631 |
ttgaatatgctgctgacaaatgtttgattgtggttgatgttttcatt |
18854585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 44112936 - 44112764
Alignment:
| Q |
71 |
gaatttttaggtatcgatgtcttgatctaaggaggcagcgattgaattctaacatgttgctgcggcataatgtggttaaactcatacggagatatctaga |
170 |
Q |
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|||||||||||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44112936 |
gaatttttaggtatcgatatcttgatctaaggaggcaacaaatgaattctaacatgttgctgcggcataatgtggttaaactcatacgaagatatctaga |
44112837 |
T |
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| Q |
171 |
agacatacatggttttgtggaggtactatccagtaggttcatcatttgaattttcgagtctcttgcacatcgt |
243 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||| |||||| ||| |||||| ||||||||||| |
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| T |
44112836 |
agacatacatggttttgtggaggtactatcctgcaggttcatcttttgaaattttgagtctattgcacatcgt |
44112764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 44113046 - 44113000
Alignment:
| Q |
10 |
ttgaatgtgcttctgacacatgtttgactgtggttgatgttttcatt |
56 |
Q |
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|||||||| || ||||||||||||||| ||||||||||||||||||| |
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| T |
44113046 |
ttgaatgttctgctgacacatgtttgattgtggttgatgttttcatt |
44113000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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