View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_3 (Length: 507)
Name: NF11929_low_3
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 200 - 492
Target Start/End: Complemental strand, 2963774 - 2963487
Alignment:
| Q |
200 |
atgatgtcattatatcacacgtttttataaaattatattaataaaaatattcaaatagttacaaatgattaataattgcattgtttttgttggatgaata |
299 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
2963774 |
atgatgtcattatatcacaagtttttataaaattatattaataaaaatattcaaatagttacaaatgattaatgattgcattgtttttgattgatgaata |
2963675 |
T |
|
| Q |
300 |
aaaacttaaaattaaaataatgatgcatcttttaaaaagcaatgagggtaaggtcgaaaacgagtcgagtcgagttgaatcttgttcagttcggttcgac |
399 |
Q |
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|||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
2963674 |
aaaaattaaaattaaaataatgctgcatctattaaaaagcaatgagggtaaggtcggaaacgagtcgagtc-----gaatcttgttcagttcgactcgac |
2963580 |
T |
|
| Q |
400 |
ttgataagaattagatcgactcaaaacttaaattcgttaaaaacnnnnnnnnctagttcgaattcgactcaattcaaactcatgaaccgttca |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
2963579 |
ttgataagaattagatcgactcaaaacttaaattcgttaaaaactttttttattagttcaaattcgactcaattcaaactcatgaaccgttca |
2963487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 2963956 - 2963832
Alignment:
| Q |
19 |
atcattcaccaagcgggaggatgacatcttgagag-tcagcaagaaaatgaaaagcttggtctttggaatcaggttgtcttttggaactccctcgtgtcc |
117 |
Q |
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|||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2963956 |
atcattaaccaagcgggagaatgacatcttgagaggtcagcaagaaaatgaaaagcttggtctttggaatcaggttgtcttttggaactccctcgtgtcc |
2963857 |
T |
|
| Q |
118 |
ttattatatgaagattttcaaaatg |
142 |
Q |
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|||||||||||| | |||||||||| |
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| T |
2963856 |
ttattatatgaatactttcaaaatg |
2963832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 200 - 430
Target Start/End: Complemental strand, 2972146 - 2971922
Alignment:
| Q |
200 |
atgatgtcattatatcacacgtttttataaaattatattaataaaaatattcaaatagttacaaatgattaataattgcattgtttttgttggatgaata |
299 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||| |||| ||||||||| |||||| ||| |
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| T |
2972146 |
atgatatcattatttcacaattttttataaaattatttttgtaaaaatattcaaatagttataaatgattaatgattgtattgttttttatggatggata |
2972047 |
T |
|
| Q |
300 |
aaaacttaaaattaaaataatgatgcatcttttaaaaagcaatgagggtaaggtcgaaaacgagtcgagtcgagttgaatcttgttcagttcggttcgac |
399 |
Q |
| |
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|||| || || |||||||||| |||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||||| ||||||| ||||| |
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| T |
2972046 |
aaaa-atataaataaaataatgctgcatcttttaaaaagcattgagggtagggtcggaaatgagtcgagtcgag-----ccttgtttagttcggctcgac |
2971953 |
T |
|
| Q |
400 |
ttgataagaattagatcgactcaaaacttaa |
430 |
Q |
| |
|
||||||||| ||| ||||||| |||||||| |
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|
| T |
2971952 |
ttgataagatttaaatcgacttgaaacttaa |
2971922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 2926630 - 2926566
Alignment:
| Q |
23 |
ttcaccaagcgggaggatgacatcttgagagtcagcaagaaaatgaaaagcttggtctttggaat |
87 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2926630 |
ttcagcaagcgggaggatgacatcttgagagtcaccaagaaaatgaaaagcttggtctttggaat |
2926566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 2951416 - 2951283
Alignment:
| Q |
19 |
atcattcaccaagcgggaggatgacatcttgagagtcagcaagaaaatgaaaagcttggtctttggaatcaggtt----gtctttt-----ggaactccc |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| ||||| | || |||||| |
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| T |
2951416 |
atcattcaccaagcaggaggatgacatcttcagagtcagcaagagaatgaaaagcttggtatttggaattaggtttcaagtcttatggcacggcactccc |
2951317 |
T |
|
| Q |
110 |
tcgtgtcctta-ttatatgaagattttcaaaatg |
142 |
Q |
| |
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| ||||||||| |||||||||||||||||||||| |
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| T |
2951316 |
ttgtgtccttatttatatgaagattttcaaaatg |
2951283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 2929360 - 2929304
Alignment:
| Q |
19 |
atcattcaccaagcgggaggatgacatcttgagagtcagcaagaaaatgaaaagctt |
75 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2929360 |
atcatccaccaagcgggaggatgacatcttgagagttagcaagaaaatgaaaagctt |
2929304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 2982332 - 2982286
Alignment:
| Q |
36 |
aggatgacatcttgagagtcagcaagaaaatgaaaagcttggtcttt |
82 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2982332 |
aggatgacatcttgagagtcagcaaggaaatgaaaagcttggtcttt |
2982286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 2934066 - 2934010
Alignment:
| Q |
26 |
accaagcgggaggatgacatcttgagagtcagcaagaaaatgaaaagcttggtcttt |
82 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2934066 |
accaagctggagagtgacatattgagagtcagcaagaaaatgaaaagcttggtcttt |
2934010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 2972469 - 2972409
Alignment:
| Q |
25 |
caccaagcgggaggatgacatcttgagag-tcagcaagaaaatgaaaagcttggtctttgg |
84 |
Q |
| |
|
|||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
2972469 |
caccaagcaggagagtgacatcttgagaggtgagcaagaaaatgaaaagcttggtctttgg |
2972409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 2998021 - 2998069
Alignment:
| Q |
39 |
atgacatcttgagagtcagcaagaaaatgaaaagcttggtctttggaat |
87 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
2998021 |
atgacatattgagagtcagcaagaaaatgaaaagcttggttgttggaat |
2998069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 3004382 - 3004438
Alignment:
| Q |
19 |
atcattcaccaagcgggaggatgacatcttgagagtcagcaagaaaatgaaaagctt |
75 |
Q |
| |
|
||||| |||||||| |||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3004382 |
atcatccaccaagctggagaatgacatattgagagttagcaagaaaatgaaaagctt |
3004438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 2972362 - 2972328
Alignment:
| Q |
108 |
cctcgtgtccttattatatgaagattttcaaaatg |
142 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
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|
| T |
2972362 |
cctcgtgtccttattatataaagattttcaaaatg |
2972328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 3338655 - 3338532
Alignment:
| Q |
19 |
atcattcaccaagcgggaggatgacatcttgagagtcagcaagaaaatgaaaagcttggtctttggaatcaggtt----gtcttttggaactccctcgtg |
114 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||| | ||| ||||||| |
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| T |
3338655 |
atcatccaccaagcgggaggatgacatcttgagagtcagcaagaaaatgaaaaggttggtctttggaattagatttcaagtcttttaggact-cctcgtg |
3338557 |
T |
|
| Q |
115 |
tccttattatatgaagattttcaaa |
139 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
3338556 |
tccttattatatgaagattttcaaa |
3338532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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