View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_4 (Length: 499)
Name: NF11929_low_4
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 48 - 483
Target Start/End: Original strand, 17913944 - 17914375
Alignment:
| Q |
48 |
aaactttgaaaaccctaatcatatatataccttccttattcgcgcttctctcttactctcttcttcatagcaaattctcccttctcctagttaatccctc |
147 |
Q |
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| T |
17913944 |
aaactttgaaaaccctaatcatata----ccttccttgttcgcgcttctctcttactctcgtc---atagcaaattctcccttctcctagttaatccctc |
17914036 |
T |
|
| Q |
148 |
cgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaactacattctcatgtttac |
247 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17914037 |
cgccatgtctcctcagcaacctatccgtgttgatccaaaaatctggcagtgctgcgccggcgctgccgttaaaattccaaaactaaattctcatgtttac |
17914136 |
T |
|
| Q |
248 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgatcgttcccgtcaattcattccctgcaccgtct |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17914137 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgaccgttcccgtcaattcattccctgcaccgtct |
17914236 |
T |
|
| Q |
348 |
ccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctggtactaacaactgtgtccacgaa---cctcttga |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |
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| T |
17914237 |
ccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctggtactaataactgtgtccacgaacctcctcctga |
17914336 |
T |
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| Q |
445 |
ggttcgtgaagaccaacatgacggggttgaggttgtttc |
483 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
17914337 |
ggttcgtgaagaccaacatgacggggttaaggttgtttc |
17914375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 131 - 440
Target Start/End: Complemental strand, 17977139 - 17976833
Alignment:
| Q |
131 |
ctcctagttaatccctccgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaac |
230 |
Q |
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||||| ||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| || ||| | | |||||||||||||||| |
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| T |
17977139 |
ctccttgttaatctctccgccatgtcttctcagcaacg---ccgtgttgatcagaaaatctggcagtgctgtgcaggcagttccgttaaaattccaaaac |
17977043 |
T |
|
| Q |
231 |
tacattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgatcgttcccgtcaatt |
330 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||| |||| |||||| |||||||||| ||| |
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| T |
17977042 |
tatattctcatgtttactacttcccattagggcacttagaacacatatgtccatccccaaaccctaacacactgtcccatcttgaccgttcccgtccatt |
17976943 |
T |
|
| Q |
331 |
cattccctgcaccgtctccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctggtactaacaactgtgtc |
430 |
Q |
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||||| |||||| |||||| ||||| ||||||||||||||| | |||||||||||| ||||||||| |||| |||||||||| |||||||| |||| |
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| T |
17976942 |
cattctctgcacagtctccgcggttgatctactcgctgacctttgtaccgatgaagtcttcgtcaaactactcctcactcctgtcactaacaaaggtgtt |
17976843 |
T |
|
| Q |
431 |
cacgaacctc |
440 |
Q |
| |
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|||||||||| |
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|
| T |
17976842 |
cacgaacctc |
17976833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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