View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11929_low_5 (Length: 415)
Name: NF11929_low_5
Description: NF11929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11929_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 1826376 - 1826782
Alignment:
| Q |
1 |
tgctggtgttttccttgcgtcacaggtacttgttgtgtctaaattttttatatgatccaactattggtgcacatctccttcacgattttaggagttttcc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
1826376 |
tgctggggttttccttgcgtcacaggtacttgttgtgtctaaattttttatatgatccaacttttggtgcacatctccttcatgatttaaggagttttcc |
1826475 |
T |
|
| Q |
101 |
gttccaaaactaagctatnnnnnnncccaaacactcagttatgtacctttttgctaccgtataatgttataaccttgagaacttcaattttgattattat |
200 |
Q |
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||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1826476 |
gttccaaaattaggctataaaaaaacccaaacactcagttatgtacctttttgctaccgtataatgttataaccttgagagcttcaattttgattattat |
1826575 |
T |
|
| Q |
201 |
ttgattatgagctcgtttggattgagctgattttgagtttatggaaaacaacttactccgtattatttttatttattaactttccctgttgctgcaatta |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1826576 |
ttgattatgggctcgtttggattgagctgattttgagcttatggaaaacaacttactccgtattatttttatttattaactttccctgttgctgcgatta |
1826675 |
T |
|
| Q |
301 |
ataactgctgttccaattctattccaatcattcgatttgctactgttgtggctattcgctttttaatttcgactatccataaattaacaggttttattct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1826676 |
ataactgctgttccaattctattccaatcattcgatttgctgttgttgtggctattcgctttttaatttcgactatccataaattaacaggttttattct |
1826775 |
T |
|
| Q |
401 |
ctctgct |
407 |
Q |
| |
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|| |||| |
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| T |
1826776 |
ctttgct |
1826782 |
T |
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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 23124865 - 23124810
Alignment:
| Q |
44 |
ttttttatatgatccaactattggtgcacatctccttcacgattttaggagttttc |
99 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23124865 |
tttttgatatgattcaactattggtgcacatctcctgcacgattttaggagttttc |
23124810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 26306660 - 26306606
Alignment:
| Q |
44 |
ttttttatatgatccaactattggtgcacatctccttcacgattttaggagtttt |
98 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| |
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| T |
26306660 |
tttttgatatgatccaactgttggtgcacatctcccgcatgattttaggagtttt |
26306606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 26047076 - 26047035
Alignment:
| Q |
214 |
cgtttggattgagctgattttgagtttatggaaaacaactta |
255 |
Q |
| |
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| T |
26047076 |
cgtttggattgagcttattttgagcttatgtaaaacaactta |
26047035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 29623385 - 29623421
Alignment:
| Q |
212 |
ctcgtttggattgagctgattttgagtttatggaaaa |
248 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||| |
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| T |
29623385 |
ctcgtttggattgagcttattttgagtttatgaaaaa |
29623421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 21788424 - 21788464
Alignment:
| Q |
215 |
gtttggattgagctgattttgagtttatggaaaacaactta |
255 |
Q |
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|||||||||||||| |||||||||||||| |||||| |||| |
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| T |
21788424 |
gtttggattgagcttattttgagtttatgcaaaacatctta |
21788464 |
T |
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