View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_104 (Length: 274)
Name: NF11930_high_104
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_104 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 43876363 - 43876118
Alignment:
| Q |
19 |
cgtcttaccatgcttgaatctgtgacccatttgcatctttctattgaaaatgaaaacttcattgtcgaagttcccaaacaagttgttgtgaaagaaccga |
118 |
Q |
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| T |
43876363 |
cgtcttacgatgcttgaatctgtgacccatttgcatctttctattgaaaatgaaaacttcattgtcgaagttcccaaacaagttgttgtgaaagaaccga |
43876264 |
T |
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| Q |
119 |
aatcattcgatttaggcacaattgaggaactgggtttgaggtttcctgtcattgcaaaacctttggaagctaacagcactgttgattctcacaatctgtt |
218 |
Q |
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| T |
43876263 |
aatcattcgatttaggcgcaattgaggaactgggtttgaggtttcctgtcattgcaaaacctttggaagctaacagcactgttgattctcacaatctgtt |
43876164 |
T |
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| Q |
219 |
tctagtttttgattttgacggtgttaagtcgttgaataatcctatg |
264 |
Q |
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| T |
43876163 |
tctagtttttgattttgacggtgttaagtcgttgaataatcctatg |
43876118 |
T |
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