View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_111 (Length: 261)
Name: NF11930_high_111
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_111 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 9765137 - 9765339
Alignment:
| Q |
15 |
agagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacggttaaatgatttcactttttcattttctagaattgtgttatggtttattg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9765137 |
agagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacagttaaataatttcactttttcattttctagaattgtgttatggtttattg |
9765236 |
T |
|
| Q |
115 |
g-ttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacacttacaatttg |
213 |
Q |
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| T |
9765237 |
gtttgaactttggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgctcgaatccatttcacacttataatttg |
9765336 |
T |
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| Q |
214 |
cta |
216 |
Q |
| |
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||| |
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|
| T |
9765337 |
cta |
9765339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 43652404 - 43652194
Alignment:
| Q |
7 |
aggagcacagagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacggttaaatgatttcactttttcattttctagaattgtgttatg |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43652404 |
aggaacacagagataaacggtacaaaaaattaaatgatttattggtagaaaataaacagttaaatgatttcactttttcattttctagaattttgttatg |
43652305 |
T |
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| Q |
107 |
gtttattgg-ttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacactt |
205 |
Q |
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| T |
43652304 |
gtttattggtttgaactttggatttcttcatgcagacaaatgatatatggagtattgtctttctatttgatgcgacggtgcccgaatccatttcacactt |
43652205 |
T |
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| Q |
206 |
acaatttgcta |
216 |
Q |
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||||||||||| |
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| T |
43652204 |
acaatttgcta |
43652194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 23416405 - 23416479
Alignment:
| Q |
142 |
caaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacacttacaatttgcta |
216 |
Q |
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| T |
23416405 |
caaatgatagatggagttgtgtcttactattcgatgcgacggtgcccgaatccatttcacacttttaatttgcta |
23416479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 41985636 - 41985706
Alignment:
| Q |
81 |
ttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgata |
150 |
Q |
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||||||| ||||| |||| |||||||| ||||||||| |||||| ||||| |||||| |||||||||||| |
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| T |
41985636 |
ttttcatattctaaaattctgttatggcttattggtttgaacttttgatttgttcatgaagacaaatgata |
41985706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 21115606 - 21115404
Alignment:
| Q |
7 |
aggagcacagagataaacggtacaaaaaattaaatgatgtattcgtagaaaataaacggttaaatgatttcactttttcattttctagaattgtgttatg |
106 |
Q |
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|||| |||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
21115606 |
aggaacacatagataaacggtacaaaaaattaaatgatttattggtagaaaataaacagttaaatgatttcactttttcattttctagaatttggttatg |
21115507 |
T |
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| Q |
107 |
gtttattggttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcgacagtgcccgaatccattttacactta |
206 |
Q |
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| T |
21115506 |
gttt-------gaactttggatttcttcatgcagacaaatgatatatggagtattgtctttctatttgatgcgacggtgcccgaatccatttcacactta |
21115414 |
T |
|
| Q |
207 |
caatttgcta |
216 |
Q |
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|||||||||| |
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| T |
21115413 |
caatttgcta |
21115404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 80746 - 80880
Alignment:
| Q |
81 |
ttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatgcg |
179 |
Q |
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||||||| ||||| |||| |||||||| |||||||| |||||| ||||| |||||| |||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
80746 |
ttttcatattctaaaattctgttatggcatattggtttgaacttttgatttgttcatgaagacaaatgatagatgga--attgtctttctattccatgcg |
80843 |
T |
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| Q |
180 |
acagtgcccgaatccattttacacttacaatttgcta |
216 |
Q |
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| ||| |||||||||||| |||||| |||||||||| |
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| T |
80844 |
atggtgaccgaatccatttcacactttcaatttgcta |
80880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 20024145 - 20024278
Alignment:
| Q |
69 |
aatgatttcactttttcattttctagaattgtgttatggtttattggttgaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttc |
168 |
Q |
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||||||||| |||||||||||||| ||||| || ||| | ||||||| ||||| ||||||||||||| |||||||||| ||||||| | |||||| |
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| T |
20024145 |
aatgatttctctttttcattttctggaattttgatatagcttattgg---aactttcaatttcttcatgcaaacaaatgatagatggagttgtatctttc |
20024241 |
T |
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| Q |
169 |
tattcgatgcgacagtgcccgaatccattttacactt |
205 |
Q |
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|||||||| || | |||||| | ||||| | |||||| |
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| T |
20024242 |
tattcgatacggcggtgcccaagtccatctcacactt |
20024278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 14601865 - 14601965
Alignment:
| Q |
79 |
ctttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgatatatggagtattgtctttctattcgatg |
177 |
Q |
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|||||||||||||||||||| || ||||| |||| |||| ||| || |||| |||||| |||||||||||| ||| ||| |||||||| |||||||| |
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| T |
14601865 |
ctttttcattttctagaattttgatatggcttatcggtttgaaatttcaatttgttcatggagacaaatgatagatgtagttgtgtctttcgattcgatg |
14601964 |
T |
|
| Q |
178 |
c |
178 |
Q |
| |
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| |
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| T |
14601965 |
c |
14601965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 19379172 - 19379242
Alignment:
| Q |
81 |
ttttcattttctagaattgtgttatggtttattggtt-gaacttcggatttcttcatgcagacaaatgata |
150 |
Q |
| |
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||||||| ||||| |||| |||||||| ||||||||| |||||| ||||| |||||| |||||||||||| |
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| T |
19379172 |
ttttcatattctaaaattctgttatggcttattggtttgaacttttgatttgttcatgaagacaaatgata |
19379242 |
T |
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