View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_115 (Length: 257)
Name: NF11930_high_115
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_115 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 6782487 - 6782691
Alignment:
| Q |
15 |
atgaagatgtgatgagctgtttcggaatgcccacagttgattgcacaatgaagctccgttgaaggaagaatgctccttcacgccaaattatcttttgttg |
114 |
Q |
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| T |
6782487 |
atgaagatgtgatgagctgtttcggaatgcccacagttgattgcacaatgaagctccgttgaaagaagaatgctccttcgcgccaaattatcttttgttg |
6782586 |
T |
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| Q |
115 |
g-taatctgttgcgcgaagaaggcgccaaacgaacaaggagaccttcgatggaatattcctatgccaaatgtcgtgagtaatgtccacagtcctgtcttc |
213 |
Q |
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| T |
6782587 |
gataatctgtt--gcgaagaaggcgccaaacgaacaaggagaccttcgatgggatattcctatgccaaatgtcgtgagtaatgtccacagtcctgtcttc |
6782684 |
T |
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| Q |
214 |
gtcagat |
220 |
Q |
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||||||| |
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| T |
6782685 |
gtcagat |
6782691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 32730392 - 32730291
Alignment:
| Q |
79 |
gaagaatgctccttcacgccaaattatcttttgttggtaatctgttgcgcgaagaaggcgccaaacgaacaaggagaccttcgatggaatattcctatgc |
178 |
Q |
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| T |
32730392 |
gaagaatgctccttcgtgacaaattgtcttttgtcggtaatctgtt--acgaaggagtcgccacgcaaacaaggaaaccttcgaaggaatattcttatgc |
32730295 |
T |
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| Q |
179 |
caaa |
182 |
Q |
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|||| |
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| T |
32730294 |
caaa |
32730291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 39464440 - 39464498
Alignment:
| Q |
129 |
gaagaaggcgccaaacgaacaaggagaccttcgatggaatattcctatgccaaatgtcg |
187 |
Q |
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| T |
39464440 |
gaagaaggcgccaaacgaacacagacaccttggatggaatattattatgccaaatgtcg |
39464498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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