View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_12 (Length: 715)
Name: NF11930_high_12
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 259 - 704
Target Start/End: Complemental strand, 47574826 - 47574359
Alignment:
| Q |
259 |
atgactaaatttgaacgataactacttgaactatgtaggatatcctcaaccgggttatcaagggggtcaaccatgttatcaagggtatcctcctccaccc |
358 |
Q |
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| T |
47574826 |
atgactaaatttgaacgataactacttgaactatgtaggatatcctcaaccgggttatcaagggggtcaaccatgttatcaagggtatcctcctccaccc |
47574727 |
T |
|
| Q |
359 |
caacctcaagtttttgtcgctcaagctccacctcc------acctgctccagcacctgaacctccagcaaaaaagtcaggaggagg------agcagggg |
446 |
Q |
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| T |
47574726 |
caacctcaagtttttgtcgctcaaactccacctccacctccacctgctcctgcacatgaacctccagcaaaaaagtcaggaggaggaggagcagcagggg |
47574627 |
T |
|
| Q |
447 |
cagcagcgggaggaggttttttggcatggtatgtattcgtctcaactaaat-------tagagtatataataaactagtatttttgggaag-nnnnnnnn |
538 |
Q |
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| T |
47574626 |
cagcagcgggaggaggttttttggcatggtatgtattcgtctcaactaaatcacagtatatagtatataataaactagtatttttgggaagaaaaaaaaa |
47574527 |
T |
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| Q |
539 |
ngtcagatattgtttactcaatgataattataatattaaaattcaaaatagatctcgactaatgtgattgagatcaaattcaaca--nnnnnnnnnnnaa |
636 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47574526 |
agtcggatattgtttattcaatgataattataatattaaaattcaaaatagatctcgactaatgtgattgagatcaaattcaacatttttttttttttaa |
47574427 |
T |
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| Q |
637 |
tcctttcttatcacaataaagtttgtcacacttaactatttttgtgttgcagctgtgccgcgatctgt |
704 |
Q |
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| T |
47574426 |
tcctttcttatcacaataaagtttgtcacacttaactatttttgtgttgcagctgtgccgcgatctgt |
47574359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 47575054 - 47574854
Alignment:
| Q |
1 |
cctcctgctattaacgttaacgtttctggtccacctcctccaccacaaggttctctcaaacaaatccatctaattaccttgattatttttgtttattcat |
100 |
Q |
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| T |
47575054 |
cctcctgctattaacgttaacgtttctggtccacctcctccaccacaaggttctctcaaacaaatccatctaattaccttgattatttttgtttattcat |
47574955 |
T |
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| Q |
101 |
tacttatatgcattttttggacgattgattaatgacatgtattgttacatacttttaacagtaaatattatgattttg-tttgttatggactaccaagtt |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||| |
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| T |
47574954 |
tacttatatgcattttttggacgattga-taatgacatgtattgttacatacttttaacagtaaatattatgattttgttttgctatcgactaccatgtt |
47574856 |
T |
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| Q |
200 |
tg |
201 |
Q |
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|| |
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| T |
47574855 |
tg |
47574854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 283 - 392
Target Start/End: Complemental strand, 47569818 - 47569715
Alignment:
| Q |
283 |
cttgaactatgtaggatatcctcaaccgggttatcaagggggtcaaccatgttatcaagggtatcctcctccaccccaacctcaagtttttgtcgctcaa |
382 |
Q |
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||||||||||||||||||||||||||| |||||||||||| || | | | |||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
47569818 |
cttgaactatgtaggatatcctcaaccaggttatcaagggtatcctcaa------ccagggtatcctccagcaccccaacctcaagttttcgtcactcaa |
47569725 |
T |
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| Q |
383 |
gctccacctc |
392 |
Q |
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|||||||||| |
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| T |
47569724 |
gctccacctc |
47569715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 47570021 - 47569943
Alignment:
| Q |
1 |
cctcctgctattaacgttaacgtttctggtccacctcctccaccacaaggttctctcaaacaaatccatctaattaccttgatt |
84 |
Q |
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|||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| ||||| |
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| T |
47570021 |
cctcctgcggttaacgttaacgtttctggtccaccacct---gcacaaggt--gctcaaacaaatccatctaattaccatgatt |
47569943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 698
Target Start/End: Complemental strand, 47569490 - 47569447
Alignment:
| Q |
655 |
aagtttgtcacacttaactatttttgtgttgcagctgtgccgcg |
698 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
47569490 |
aagtttgtcaaactttgctatttttgtgttgcagctgtgccgcg |
47569447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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