View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_high_122 (Length: 249)
Name: NF11930_high_122
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_122 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29046574 - 29046336
Alignment:
| Q |
1 |
tttggctgcagaatatccagtttacaaaatnnnnnnncaaatgtacccatatatctctgaaagtagtgaaatttcttcctcatttggtgcttcaagaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29046574 |
tttggctgcagaatatccagtttacaaaataaaaagacaaatttacccatatatctctgaaagtagtgaaatttcttcctcatttggtgcttcaagaatc |
29046475 |
T |
|
| Q |
101 |
tgagtcacacaaaagagttaacctgcggttaagttccataaatcagcaaatgtaaagcttagccactgtaaatggcaaatcactgtataatagacaggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29046474 |
tgagtcacacaaaagagttaacctgcggttaagttccataaatcagcaaatgtatagcttagccactgtaaatggcaaatcactgtataatagacaggct |
29046375 |
T |
|
| Q |
201 |
gttaagaattgtgtcgcaagtcacatgcatggagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29046374 |
gttaagaattgtgtcgcaagtcacatgcatggagttcat |
29046336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University