View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_123 (Length: 246)
Name: NF11930_high_123
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_123 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37069660 - 37069891
Alignment:
| Q |
1 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
101 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
201 |
agcttggaacattgcatgacataggttgtttg |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
37069860 |
agcttggaacattgcatgacataggttgtttg |
37069891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37079420 - 37079651
Alignment:
| Q |
1 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| || | ||||||| ||||||||||||||| ||| ||||||| |
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| T |
37079420 |
gccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttca |
37079519 |
T |
|
| Q |
101 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
200 |
Q |
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| ||||||||||||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37079520 |
gagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaa |
37079619 |
T |
|
| Q |
201 |
agcttggaacattgcatgacataggttgtttg |
232 |
Q |
| |
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| | |||||||||||||||||||||||||||| |
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| T |
37079620 |
aacatggaacattgcatgacataggttgtttg |
37079651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36948299 - 36948068
Alignment:
| Q |
1 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || || ||||||||| ||||||||| ||||| || ||||||| |
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| T |
36948299 |
gccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaattggcataacaattttca |
36948200 |
T |
|
| Q |
101 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
200 |
Q |
| |
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| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36948199 |
gagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaataatgatattgtgatgaagataatgaa |
36948100 |
T |
|
| Q |
201 |
agcttggaacattgcatgacataggttgtttg |
232 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
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| T |
36948099 |
tgcttgaaacattgcatgacataggttgtttg |
36948068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 36956375 - 36956147
Alignment:
| Q |
1 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||||||| |||||||||||| |||||||||| |||| || ||||| | |
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| T |
36956375 |
gccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagaagcggcacaacaattttga |
36956276 |
T |
|
| Q |
101 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
200 |
Q |
| |
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| | ||||| ||||||||||||||||||||| ||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36956275 |
gagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaagataatgaa |
36956176 |
T |
|
| Q |
201 |
agcttggaacattgcatgacataggttgt |
229 |
Q |
| |
|
| | |||||||||||||||||||| |||| |
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|
| T |
36956175 |
aacatggaacattgcatgacatagattgt |
36956147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 36935509 - 36935293
Alignment:
| Q |
13 |
agttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttcagtgagaaagtca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||| |||||||||| |||| |||||||| || | ||||||| |
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| T |
36935509 |
agttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagaggtaaagtca |
36935410 |
T |
|
| Q |
113 |
ccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaaagcttggaacat |
212 |
Q |
| |
|
|||||||||||| |||| | ||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
36935409 |
gcaattcagttaacccaaatgttgcccaaaagagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacat |
36935310 |
T |
|
| Q |
213 |
tgcatgacataggttgt |
229 |
Q |
| |
|
|| ||||||||| |||| |
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| T |
36935309 |
tgtatgacatagattgt |
36935293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 12493451 - 12493673
Alignment:
| Q |
3 |
caaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttcagt |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| |||||||||||| |||||||||| |||| || ||||| || |
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| T |
12493451 |
caaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaagataacgaaatgagagcgattccaagaagcggcatgaccattttgaga |
12493550 |
T |
|
| Q |
103 |
gagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaaag |
202 |
Q |
| |
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| ||||| |||||||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
12493551 |
gtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaagataatgaaag |
12493650 |
T |
|
| Q |
203 |
cttggaacattgcatgacatagg |
225 |
Q |
| |
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| ||||||||||||||||||||| |
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|
| T |
12493651 |
catggaacattgcatgacatagg |
12493673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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