View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_125 (Length: 246)
Name: NF11930_high_125
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_125 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 41366548 - 41366774
Alignment:
| Q |
4 |
tcgggtttcagatcagtccactgtcaacattttcatgtcattcaaaatatatttataattcaacgtggttataataaatttatggaaacatacatttcaa |
103 |
Q |
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| T |
41366548 |
tcgggtttcagatcattccactgtcaacattttcatgtcattcaaaatatatttataattcaacgtggttataataaatttatggaaacatacatttcaa |
41366647 |
T |
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| Q |
104 |
tggaagatcggatttggattctcttcattgaaaattccttcaagttttctcccaaattctggaagatcctccaatgaatcataagttaccaggacaaaac |
203 |
Q |
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| T |
41366648 |
tggaagatcggatttggattctcttcattgaaaattccttcaagttttctcccaaattctggaagatcctccaatgaatcataagttaccaggacaaaac |
41366747 |
T |
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| Q |
204 |
tatatggattttgtaagtagtatttct |
230 |
Q |
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| T |
41366748 |
tatattgattttgtaagtagtatttct |
41366774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 7719655 - 7719699
Alignment:
| Q |
111 |
tcggatttggattctcttcattgaaaattccttcaagttttctcc |
155 |
Q |
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| T |
7719655 |
tcggatttggatcctcttcattgaaaactttttcaagttttctcc |
7719699 |
T |
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