View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_126 (Length: 245)
Name: NF11930_high_126
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_126 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 36877789 - 36877636
Alignment:
| Q |
66 |
tgccaaatcaaagttaataaatcccagatgatttgtagagccaaataaaacttctgcttgaaacaggtacatcaatatttccaaaatcatagttaatagc |
165 |
Q |
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| T |
36877789 |
tgccaaatcaaagttgataaatcccagatgatttgtagagccaaataaaacttcaacttgaaacaggtatagcaatatttccaaaatcatagttaatagc |
36877690 |
T |
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| Q |
166 |
ttaaaactgccattcaaagatggcatacagtaaaaaaccagtaaaatgtaaatg |
219 |
Q |
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| T |
36877689 |
ttaaaactgccattcaaagatggcatacagtaaaaaaccagtaaaatgtaaatg |
36877636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 36877916 - 36877877
Alignment:
| Q |
3 |
atatcagaacacgaacctatactaatgcacatgaaagcgt |
42 |
Q |
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| T |
36877916 |
atatcagaacacaaacctatactaatgcacacgaaagcgt |
36877877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 15046814 - 15046859
Alignment:
| Q |
138 |
caatatttccaaaatcatagttaatagcttaaaactgccattcaaa |
183 |
Q |
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| T |
15046814 |
caatatttccaaaattttagctaatagcttgaaactgccattcaaa |
15046859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 15046752 - 15046796
Alignment:
| Q |
101 |
tagagccaaataaaacttctgcttgaaacaggtacatcaatattt |
145 |
Q |
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| T |
15046752 |
tagaaccaaatcaaacttctgcttgaaacaggtatagcaatattt |
15046796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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