View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_131 (Length: 240)
Name: NF11930_high_131
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_131 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 52582675 - 52582896
Alignment:
| Q |
1 |
agttaatgtttgaagtgttttattttgtcggaatttatcgacgtgcactatatgtgattgttgtaaatttgagaccctaactcgattcctacccataaaa |
100 |
Q |
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| T |
52582675 |
agttaatgtttgaagtgttttattttgtcggaatttatcgacgtgcactgtatgtgattgttgtaaatttgagaccctaacttgattcctacccataaaa |
52582774 |
T |
|
| Q |
101 |
gaaaaagtgaaagaaatttgtcgccttagtctctactactataataaatgcttaagaggctaaattaacatatcattagnnnnnnnggaaaggggtagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
52582775 |
gaaaaagtgaaagaaatttgtcgccttagtctctactactataataaatgcttaagaggctaaattaacat---attagaaaaaaaggaaaggggtagtt |
52582871 |
T |
|
| Q |
201 |
tttggataaggaattacttggtttt |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
52582872 |
tttggataaggaattacttggtttt |
52582896 |
T |
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