View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_138 (Length: 223)
Name: NF11930_high_138
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_138 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 44541604 - 44541407
Alignment:
| Q |
16 |
cttataactcactcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacagcttgaatcacacaaagtgctcccaac |
115 |
Q |
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| T |
44541604 |
cttataactcactcacctaccacaagctgcctaaattgcaagatcaaaccaactatggata-tcatttcaacagcttgaatcacacaaagtgctcctaac |
44541506 |
T |
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| Q |
116 |
attttattctctctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattgaccattgattttagtctgtgctcct |
213 |
Q |
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| T |
44541505 |
attttattctctctttccatatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattgaccattgattttagtttgtgttcct |
44541407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 472937 - 472748
Alignment:
| Q |
19 |
ataactcactcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacag-cttgaatcacacaaagtgctcccaacat |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||| || || |||||||||| |||||||||||| ||||||| |||||| |
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| T |
472937 |
ataactcactcacccaccaccagctgcctaaattgcaagatcaaaccaactatgaat-attatttcaacagccttgaatcacac--agtgctctcaacat |
472841 |
T |
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| Q |
118 |
tttattctctctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattgaccattgattttagtctgtgctcct |
213 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||| |
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| T |
472840 |
tttattctctct----atatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattgaccattaattttagtttgtgttcct |
472748 |
T |
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