View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_140 (Length: 213)
Name: NF11930_high_140
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_140 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 56263576 - 56263759
Alignment:
| Q |
1 |
taacgagaatctctttacaaaactctctcaaacattcactttccaatattttaacatacaaaacttacatgactcgcaccattctagaaaagatctacta |
100 |
Q |
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| T |
56263576 |
taacgagaatctctttacaaaactctctcaaacgttcactttccaatattttaacatacaaaacttacatgactcccaccattctagaaaagatctacca |
56263675 |
T |
|
| Q |
101 |
tcctcaatggttgatctcgtctccataagatttgtacttaataggtaattggggagaaaattttataggtacttaatgaggtgc |
184 |
Q |
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|||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
56263676 |
tcctcaattgtagatctcatctccataagatttgtacttaataggtaattggggagaaaattttgtaggtacttaatgaggtgc |
56263759 |
T |
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