View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_141 (Length: 212)
Name: NF11930_high_141
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_141 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 15999254 - 15999442
Alignment:
| Q |
9 |
cagaacctgtggcagcttgtaaacattgccataaacgatatcactgtcattctaaagcacatgggacatccagcatgttagcacacactaaaatttgtct |
108 |
Q |
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| T |
15999254 |
cagaacctgtagcagcttgtaaacattgccataaacgatatcactgtcattctaaagcacatgggacatccagcatgttagcacacactaaaatttgtct |
15999353 |
T |
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| Q |
109 |
tcaaaaaccctctaacatgttaaaagaccctaggcaatcaaaccttgtaagtggaaagggtggtttgctagttgctgcaaaccaaaggt |
197 |
Q |
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| T |
15999354 |
tcaaaaaccctctaacatgttaaaataccctaggcaatcaaaccttgtaagtggaaagggtggtttgctagttgctgcaaaccaaaggt |
15999442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 6839547 - 6839359
Alignment:
| Q |
9 |
cagaacctgtggcagcttgtaaacattgccataaacgatatcactgtcattctaaagcacatgggacatccagcatgttagcacacactaaaatttgtct |
108 |
Q |
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| T |
6839547 |
cagaacctatagcagtttgtaaacattgccataaacgatatcgctgtcattctaaagcacatgggacatctagcatgttagcacacactaaaatttgtct |
6839448 |
T |
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| Q |
109 |
tcaaaaaccctctaacatgttaaaagaccctaggcaatcaaaccttgtaagtggaaagggtggtttgctagttgctgcaaaccaaaggt |
197 |
Q |
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| T |
6839447 |
tcaaaaaccctctaacatgttaaaagacactaggcaatcaaaccttgtaagtggaaagggtggtttgctagttgctgcaaaccaaaggt |
6839359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 7284971 - 7285151
Alignment:
| Q |
20 |
gcagcttgtaaacattgccataaacgatatcactgtcattctaaagcacatgggacatccagcatgttagcacacactaaaatttgtcttcaaaaaccct |
119 |
Q |
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| T |
7284971 |
gcagcttgtaaacattgtcatagacgatatcgttgtgattctaaagcacatgggacatccagcatgttagcacactctaaagtttgtcttcaaaaacctt |
7285070 |
T |
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| Q |
120 |
ctaacatgttaaaagaccctaggcaatcaaacctt---gtaagtggaaagggtggtttgctagttgctgcaaaccaaaggt |
197 |
Q |
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| T |
7285071 |
ctaacatattaaaagaccctaggcaattaaaccttgtagtaggtagaaagggtggttttctagttcctgcaaaccaaaggt |
7285151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 49282350 - 49282192
Alignment:
| Q |
23 |
gcttgtaaacattgccataaacgatatcactgtcattctaaagcacatgggacatccagcatgttagcacacactaaaatttgtcttcaaaaaccctcta |
122 |
Q |
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| T |
49282350 |
gcttgtaaacactgccataaaagatatcattgtgattctaaattaaatgggacgtccaacatgttagcacactctagagtctgccttaagaaaccagaga |
49282251 |
T |
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| Q |
123 |
acatgttaaaagaccctaggcaatcaaaccttgtaagtggaaagggtggtttgctagtt |
181 |
Q |
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| T |
49282250 |
acatgctaaatgaccctaggcaaacaaatcttataaatgggaagggtggttttctagtt |
49282192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 13786409 - 13786480
Alignment:
| Q |
23 |
gcttgtaaacattgccataaacgatatcactgtcattctaaagcacatgggacatccagcatgttagcacac |
94 |
Q |
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||||||||||| ||||||||| |||||| ||| |||||||| | |||||| |||||||||||||||||| |
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| T |
13786409 |
gcttgtaaacactgccataaaagatatcgttgtgattctaaattaaatgggaagtccagcatgttagcacac |
13786480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 13786663 - 13786734
Alignment:
| Q |
23 |
gcttgtaaacattgccataaacgatatcactgtcattctaaagcacatgggacatccagcatgttagcacac |
94 |
Q |
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||||||||||| ||||||||| |||||| ||| |||||||| | |||||| |||||||||||||||||| |
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| T |
13786663 |
gcttgtaaacactgccataaaagatatcgttgtgattctaaattaaatgggaagtccagcatgttagcacac |
13786734 |
T |
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