View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_high_144 (Length: 211)

Name: NF11930_high_144

Description: NF11930

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11930_high_144

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 122; E-Value: 9e-63

Query Start/End: Original strand, 22 - 194

Target Start/End: Complemental strand, 2263805 - 2263632

Alignment:

Q	22	tatatgttttacgaattagcaatttcgttcgttgaacagtatattaagttcaattgttaaatactatgacatgacacgttaaatgaagatgtgacagttc	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2263805	tatatgttttacgaattagcaatttcgttcgttgaacattacattaagttcaatcgttaaatactatgacatgacacgttaaatgaagatgtgacagttt	2263706	T

Q	122	atattaattcaacatcattattagagatagaaacaggttaaatcatccgacaaaggcgtatcacc-agcctatt	194	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	2263705	atattgattcaacatcactattagagatagaaacagattaagtcgtccgacaaagacctatcacctagcctatt	2263632	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 93 - 138

Target Start/End: Complemental strand, 21324873 - 21324828

Alignment:

Q	93	tgacacgttaaatgaagatgtgacagttcatattaattcaacatca	138	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|
T	21324873	tgacacgttaaatgaagatgtgatagttcatgtgaattccacatca	21324828	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]