View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_2 (Length: 936)
Name: NF11930_high_2
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 331 - 816
Target Start/End: Original strand, 54859610 - 54860097
Alignment:
| Q |
331 |
atctttatcttgattcttgcttaaatattgttcaatgttcattgctctaaaatttaatggcaggtactgtaaatgtgagatgccatataatcctgatgaa |
430 |
Q |
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| T |
54859610 |
atctttatcttgattcttgcttaaatattgttcaatgttcaatgctctaaaatttaatggcaggtactgtaaatgtgagatgccatataatcctgatgaa |
54859709 |
T |
|
| Q |
431 |
gttatggtccagtgtgatcactgcactgattggtaattttaacattacctgtactttatatttatcttgtactctgnnnnnnng---tatatgtttggtt |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||| |
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| T |
54859710 |
gttatggtccagtgtgatcactgcactgattggtaattttaacattacctgtactttatatttatcttgtactctgtttttttgctttgtatttttggtt |
54859809 |
T |
|
| Q |
528 |
ttctggactctcgtacgtctgtctggttctatgaaaagaaaacaattatatattttaagtcggcattaaccatatgagcataatttttcctagtgtaaat |
627 |
Q |
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| T |
54859810 |
ttctggactctcgtacgtctgtctggttctatgaaaagaaaacaattat----tttaagtcggcattaaccatatgagcataatttttcctagtgtaaat |
54859905 |
T |
|
| Q |
628 |
tcttccaattaacttgggctactcttctattcttagtgatttcttgttttgctttgtt----tcgctctggcgcattgcttctctcagaattgttatttg |
723 |
Q |
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| T |
54859906 |
tcttccaattaacttgggctactcttctattcttagtgatttcttgttttgctttgtttcgctcgctctggcgcattgcttctctc-gaattgttatttg |
54860004 |
T |
|
| Q |
724 |
atgcatgcttttaaacctattctcccttgttctgcttatacagtactagtattgatgcatgatttaaatgtgtgtatgcttgtttggatttca |
816 |
Q |
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| T |
54860005 |
atgcatgcttttaaacctattctcccttgttctgcttatacagtactagtattgatgcatgatttaaatgtgtgtatgcttgtttggatttca |
54860097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 54859261 - 54859577
Alignment:
| Q |
13 |
gagatgaaagctgattcacgagacgttcgtgtccgttggtattactggccggaggagacaaagaagggtcggcgtcatttccatggctcaaaggagctta |
112 |
Q |
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| T |
54859261 |
gagatgaaagctgattcacgagacgttcgtgtccgttggtattactggccggaggagacaaagaagggtcggcgtcatttccatggctcaaaggagctta |
54859360 |
T |
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| Q |
113 |
ttctatctgatcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagcttgatgttgttggtga |
212 |
Q |
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| T |
54859361 |
ttctatctgatcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaagtacatgaagcttgatgttgttggtga |
54859460 |
T |
|
| Q |
213 |
tgatgatttcttctgtcgattcaactacaattccgctactggtgctctcactcctgatatagttcaagtgtgagttcaacctttgcatatatattttcct |
312 |
Q |
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| T |
54859461 |
tgatgatttcttctgtcgattcaactacaattccgctactggtgctctcactcctgatatagttcaagtgtgagttcatcctttgcatatatattttcct |
54859560 |
T |
|
| Q |
313 |
attattacagaaaataa |
329 |
Q |
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| T |
54859561 |
attattacagaaaataa |
54859577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 97 - 290
Target Start/End: Original strand, 54853725 - 54853918
Alignment:
| Q |
97 |
ggctcaaaggagcttattctatctgatcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagc |
196 |
Q |
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|||||||| |||||| |||| || |||||||||||||||||||||| ||||||||| |||||||| ||| |||||| |||| |||| ||||| |||| |
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| T |
54853725 |
ggctcaaaagagctttttctgtcagatcattttgatgttcagagtgctgatacaattgaaggaaagtgtgttgttcatggtttcaagagctacactaagc |
54853824 |
T |
|
| Q |
197 |
ttgatgttgttggtgatgatgatttcttctgtcgattcaactacaattccgctactggtgctctcactcctgatatagttcaagtgtgagttca |
290 |
Q |
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| T |
54853825 |
ttgatgctgttggtaatgatgatttcttctgtcgatttgagtacaattctgctactggtgctttcaatcctgatagagttgcagtgtgagttca |
54853918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 842 - 920
Target Start/End: Original strand, 54863659 - 54863737
Alignment:
| Q |
842 |
attatgtttcttttgattatacatgtaattgttcatgacatgtgatataggaaagctaaagacaataatacttctagtt |
920 |
Q |
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| T |
54863659 |
attatgtttctttcgactatacatgtaattgttcatgacatgtgatttaggaaagctaaagaatattgtacttctagtt |
54863737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 873 - 917
Target Start/End: Original strand, 54860094 - 54860138
Alignment:
| Q |
873 |
ttcatgacatgtgatataggaaagctaaagacaataatacttcta |
917 |
Q |
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| T |
54860094 |
ttcatgacatgtgatataggaaagctaaagacaataatacttcta |
54860138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 736 - 920
Target Start/End: Original strand, 54855155 - 54855352
Alignment:
| Q |
736 |
aaacctattctcccttgttctgcttatacagtactagtattgatgcat--------gatttaaatgtgtgtatgcttgtttggatttcagacttctggat |
827 |
Q |
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| T |
54855155 |
aaacctactctcccttgttcttcttatacaatacttttattcatgcatagattcgtgctttaaatgtgtgtatgcttgtttggattatggacatttagat |
54855254 |
T |
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| Q |
828 |
tgcaactcaagactattatgtttcttttgattatacatgtaattgttcatgac-----atgtgatataggaaagctaaagacaataatacttctagtt |
920 |
Q |
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| T |
54855255 |
tgtatatccagagaattatgtttcttttgattatacttgttatttttcatggcatatgatatgatataggtaagctaaagacgataataattctagtt |
54855352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 54854670 - 54854751
Alignment:
| Q |
366 |
tgttcattgctctaaaatttaatggcaggtactgtaaatgtgagatgccatataatcctgatgaagttatggtccagtgtga |
447 |
Q |
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| T |
54854670 |
tgttcattgctcaaaattttcatggcaggtattgtaaatgtgagatgccctacaaccctgatgatctgatggttcagtgtga |
54854751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 38474728 - 38474817
Alignment:
| Q |
122 |
atcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagcttgatgttgttggtg |
211 |
Q |
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| T |
38474728 |
atcattatgatgttcatagtgctgacacaattgaagggaagtgttttgtgcacaatttgaagaactacatgaagcttgaagttgtaggtg |
38474817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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