View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_21 (Length: 620)
Name: NF11930_high_21
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 4 - 602
Target Start/End: Complemental strand, 38408097 - 38407500
Alignment:
| Q |
4 |
tcatcaaagatgtcttcccaaccctgaaacaaaatataaaaatcaaaatttaattcacatttatcaataataacaactccatgaagtaataataatatca |
103 |
Q |
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| T |
38408097 |
tcatcaaagatgtcttcccaaccctgaaacaaaatataaaaatcaaaatttaattcacatttatcaataataacaactccatgaag-aataataatatca |
38407999 |
T |
|
| Q |
104 |
taaaaatgacatgatcaaacatatgaagaaggaaaaaatgataacatacccactatctccaaggacaatgaccttaagcaaagttctctttctgtgtgaa |
203 |
Q |
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| T |
38407998 |
taaaaatgacatgatcaaacatatgaagaaggaaaaaatgataacatacccactatctccaaggacaatgaccttaagcaaagttctctttctgtgtgaa |
38407899 |
T |
|
| Q |
204 |
ctagaaatatccatgttggagattcaaaactcaaaagcacttaacagaagaagcagatataacaattttcttcttcttttcaatatcaagcaatgaatgg |
303 |
Q |
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| T |
38407898 |
ctagaaatatccatgttggagattcaaaactcaaaagcacttaacagaagaagcagatataacaattttcttctttttttcaatatcaagcaatgaatgg |
38407799 |
T |
|
| Q |
304 |
tgaagtaattattgaaaagaagaagggnnnnnnnnggttgaagagaaaagggaatcccgtgttggaggttgttcttgattcttctttaatgatgataggt |
403 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407798 |
tgaagtaattattgaaaagaagaagggaaaaaaaaggttgcagagaaaagggaatcccgtgttggaggttgttcttgattcttctttaatgatgataggt |
38407699 |
T |
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| Q |
404 |
aataacactttttgtttgtgtgtatttcttctgcatttgaatgatgcaaggtgagaatcatgtgaattttgacaactaaaaccaaagttctagtgacagc |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38407698 |
aataacactttttgtttgtgtgtatttcttctgcatttgaatgatgcaaggtgagaatcatgtgaattttgacaactaaaaccaacgttctagtgacagc |
38407599 |
T |
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| Q |
504 |
gaatcattattatattcaatgttataaagtannnnnnngatgacttataaagtttaataatgaaattggattatatacgtgcgtgcctctagttgttcg |
602 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38407598 |
gaatcattattatattcaatgttataaagtatttttttgatgacttataaagtttaataatgaaattggattatgtacgtgcgtgcctctagttgttcg |
38407500 |
T |
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