View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_26 (Length: 582)
Name: NF11930_high_26
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 17 - 563
Target Start/End: Complemental strand, 55024136 - 55023590
Alignment:
| Q |
17 |
cagagaggtcaattccaacaaccccaaaatgcctcatttccagcgcaagcatgacctgcagcaaagaagcaaattattcaaaggaagtaataaacagcct |
116 |
Q |
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| T |
55024136 |
cagagaggtcaattccaacaaccccaaaatgcctcatttccagcgcaagcatgacctgcagcaaagaagcaaattattcaaaggaagtaataaacagcct |
55024037 |
T |
|
| Q |
117 |
taagtttgcccaaattatttgtgtattacactcacagtttccattgctgcttccgttgtctccctccggtcaatgcttaagagaagcctaacaaagactt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55024036 |
taagtttgcccaaattatttgtgtattacactcacagtttccattgctgcttccgttgtctccctccggtcaatgcttaagagaagcctaacaaagactt |
55023937 |
T |
|
| Q |
217 |
ttttcctagtattttcattacttctatcatctgtagctgagactgagagtatagggtttgaatggtttttaatctcctcgctgagaggaataaaacccag |
316 |
Q |
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| T |
55023936 |
ttttcctagtattttcattacttctatcatctgtagctgaggctgagagtatagggtttgaatggtttttaatctcctcgctgagaggaataaaacccag |
55023837 |
T |
|
| Q |
317 |
atgaaccgaactgacagctcttagaccttcaagtacagcttcaatataagagcgtttgctcattcctttggactcatttttctgcatgaaattaagcaaa |
416 |
Q |
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| T |
55023836 |
atgaaccgaactgacagctcttagaccttcaagtacagcttcaatataagagcgtttgctcattcctttggactcatttttctgcatgaaattaagaaaa |
55023737 |
T |
|
| Q |
417 |
tattttcttcacaaattcatggagacaagcacacaaaaaatattaacgactgagatcctttatttacctttggagtagttctcaactccacatacacaac |
516 |
Q |
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| T |
55023736 |
tattttcttcacaaattcatggagacaagcacacaaaaaatattaacgactgagatcctttatttacctttggagtagttctcaactccacatacacaac |
55023637 |
T |
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| Q |
517 |
attctctgacgcaaaatcttcaacaacctgcatatagaagttgctac |
563 |
Q |
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| T |
55023636 |
attctctgatgcaaaatcttcaacaacctgcatatagaagttgctac |
55023590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 7936172 - 7936108
Alignment:
| Q |
17 |
cagagaggtcaattccaacaaccccaaaatgcctcatttccagcgcaagcatgacctgcagcaaa |
81 |
Q |
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| T |
7936172 |
cagagagatcaattccaactacacctaaatgcctcatttctagtgcaagcttgacctgcaacaaa |
7936108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 7935704 - 7935645
Alignment:
| Q |
480 |
ttacctttggagtagttctcaactccacatacacaacattctctgacgcaaaatcttcaa |
539 |
Q |
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|||||||||||||||| || ||||||| ||| |||||||| ||||| |||||||| |||| |
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| T |
7935704 |
ttacctttggagtagtccttaactccaaatagacaacattatctgatgcaaaatcctcaa |
7935645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 7936037 - 7935980
Alignment:
| Q |
150 |
acagtttccattgctgcttccgttgtctccctccggtcaatgcttaagagaagcctaa |
207 |
Q |
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||||||||||| |||||||| ||||| || || ||||| |||||||||| |||||||| |
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| T |
7936037 |
acagtttccatagctgcttctgttgtttctctgcggtcgatgcttaagataagcctaa |
7935980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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