View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_27 (Length: 578)
Name: NF11930_high_27
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 49916674 - 49916117
Alignment:
| Q |
18 |
cttggttgactcctttttggcctctatgtgtaaaaacagaaacaaaactattatccttgttggccttaacaactccagaggaactcaataacaattcatt |
117 |
Q |
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| T |
49916674 |
cttggttgactcctttttggcctctatgtgtaaaaacagaaacaaaactattatccttgttggccttaacaactccagaggaactcaataacaattcatt |
49916575 |
T |
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| Q |
118 |
ctttcttgcttcctttgccaattcttccacagctttccttgcatcatcctttcgaaaattcttctctttcttgatcgacatagttcttgccaatccgttg |
217 |
Q |
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| T |
49916574 |
ctttcttgcttcctttgccaattcttccacagctttccttgcatcatcctttcgaaaattcttctctttcttgatcgacatagttcttgccaatccgttg |
49916475 |
T |
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| Q |
218 |
acaaaagatgggaaatgaaccatgataactgcatgccaattattgttttagaaattaacacactcaacatatatatagttctaagttcataaatgcaatg |
317 |
Q |
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| T |
49916474 |
acaaaagatgggaaatgaaccatgataactgcatgccaattattgttttagaaattaacacactcaacatatatatagttctaagttcatatatgcaatg |
49916375 |
T |
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| Q |
318 |
aaaattttagcttagtaaaggaa--------atacaagaccttgatattcgatgaagaaaaataactcaagttatttatattccttgagttatggaatca |
409 |
Q |
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| T |
49916374 |
aaaattttagcttagtaaaggaaataatgatatacaagaccttgatattcgatgaagaaaaataactcaagttatttatattccttgagttatggaatca |
49916275 |
T |
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| Q |
410 |
caccacctgcaaatcctatagccacaggaaacgtgaaatgaatggtaaatagtaagtatgctactaatcctactatatactctctccatacaaagtttaa |
509 |
Q |
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| T |
49916274 |
caccacctgcaaatcctatagccacaggaaacgtgaaatgaatggtaaatagtaagtatgctactaatcctactatatactctctacatacaaagtttaa |
49916175 |
T |
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| Q |
510 |
gcacaattctttctttattgtaaaagtatatttctaatgtggtgtcattctcatctctgctt |
571 |
Q |
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| T |
49916174 |
gcacaa----ttctttattgtaaaagtatatttctaatgtggtgtcattctcatctttgctt |
49916117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 13736623 - 13736702
Alignment:
| Q |
86 |
acaactccagaggaactcaataacaattcattctttcttgcttcctttgccaattcttccacagctttccttgcatcatc |
165 |
Q |
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|||| |||||| |||||||| |||| ||||||||| ||||||||||||||| | |||||||| |||||||||||||||| |
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| T |
13736623 |
acaattccagatgaactcaacaacatttcattcttctttgcttcctttgccattgcttccacaactttccttgcatcatc |
13736702 |
T |
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