View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_28 (Length: 570)
Name: NF11930_high_28
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 719039 - 719587
Alignment:
| Q |
1 |
tttattattcctacttcttttgattccttctcatgaacgtgaagaaaatatatactgatgatatagtcaattgtgagtatgcttctattatctacaaggt |
100 |
Q |
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| T |
719039 |
tttattattcctacttcttttgattccttctcatgaacgtgaagaaaatatatactgatgatatagtcaattgtgtgtatgcttctattat-------gt |
719131 |
T |
|
| Q |
101 |
ctatgtttgacctctattgaagttgaatatgatataatttagttgcagattaattgagaactatttgaaagtatcaattatataataataaaaagtaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
719132 |
ctatgtttgacctctattgaagttgaatatgatataatttatttgcagattaattgagaactatttgaaagtatcatatatataataataaaaaggaaat |
719231 |
T |
|
| Q |
201 |
atataaagtgcaatttagagcgaattgatatccttatcaaaggttaaacagaaaattatttaattatcaaatagtatcatcctatcttatttaaccaacg |
300 |
Q |
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| T |
719232 |
atataaagtgcaatttagatcgaattgatatccttatcaaaggttaaacagaaaattatttaattatcaaatagtatcatcctatcttatttaaccaacg |
719331 |
T |
|
| Q |
301 |
ggcatgattataagaagctaatttccttttttgttgggtttatgtgtacttaagtatgattctagctgattatatatattctttgtttcgttatatcagt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
719332 |
ggcatgattataagaagctaatttccttttttgttgggattatgtgtacttaagtatgattctagctgattatatatattctttgtttcgttatatcagt |
719431 |
T |
|
| Q |
401 |
gaattatttatgttcttaattcnnnnnnncgacatgaaactcctaaattgattatttcatttagagagtgcttgacaaaaactctttagacttaagctaa |
500 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
719432 |
gaattatttatgttcttaattctttttttcgacatgaaactcctaaattgattatttcatttagagagtgcttgacaaaaactctttagacttaagctaa |
719531 |
T |
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| Q |
501 |
atttatagttacataattctatcatacaaatcaactaaccctggcaatatataatc |
556 |
Q |
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| T |
719532 |
atttatagttacataattctatcatacaaatcaactaaccttgacaatatataatc |
719587 |
T |
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