View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_36 (Length: 480)
Name: NF11930_high_36
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 33900270 - 33900730
Alignment:
| Q |
1 |
ataagcaaaattgaacttaaaattgatggcataaaaaatgaacaatcaatgtatatcattgaacaatctcttaggacacttcaaggtgttgaaaccatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900270 |
ataagcaaaattgaacttaaaattgatggcataaaaaatgaacaatcaatgtatatcattgaacaatctcttaggacacttcaaggtgttgaaaccatag |
33900369 |
T |
|
| Q |
101 |
aaacatatttagacattaataaaattgtcttaacttataaaccttatatgactggtccaagaactttcattgaactcattgaatcttcaggatcagggtg |
200 |
Q |
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| T |
33900370 |
aaacatatttagacattaataaaattgtcttaacttataaaccttatatgactggtccaagaactttcattgaactcattgaatcttcaggatcagggtg |
33900469 |
T |
|
| Q |
201 |
ttttagagccacaatatttccaaatgatggtggaagaaaagcacataaacaagaggaaattaatagatactttaaattattaatttggagtttggttttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900470 |
ttttagagccacaatatttccaaatgatggtggaagaaaagcacataaacaagaggaaattaatagatactttaaattattaatttggagtttggttttt |
33900569 |
T |
|
| Q |
301 |
actgttcctgnnnnnnnaacatctatggttcttatgtatatacctggagttaaagatgttttagaggtcaaaattgtcaatatgttgaatattggattgc |
400 |
Q |
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| T |
33900570 |
actgttcctgtttttttaacatctatggttcttatgtatatacctggagttaaaaatgttttagaggtcaaaattgtcaatatgttgaatattggattgc |
33900669 |
T |
|
| Q |
401 |
tcatacggtgggagttttcgacaccggtacagtttgtcataggaagaagattttatgttgg |
461 |
Q |
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| T |
33900670 |
tcatacggtgggagttttcgacaccggtacagtttgtcataggaagaagattttatgttgg |
33900730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 42516318 - 42516197
Alignment:
| Q |
115 |
attaataaaattgtcttaacttataaaccttatatgactggtccaagaactttcattgaactcattgaatcttcaggatcagggtgttttagagccacaa |
214 |
Q |
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||||| ||||||||||||| ||||||||| ||||| ||||| |||| ||| |||||||| | ||||| ||| || |||||| ||||||||||||| | |
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| T |
42516318 |
attaaaaaaattgtcttaatttataaaccatatataactggaccaaaaaccttcattgatgtaattgagtctaaagtatcaggttgttttagagccatga |
42516219 |
T |
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| Q |
215 |
tatttccaaatgatggtggaag |
236 |
Q |
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|||||| |||||| ||||||| |
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| T |
42516218 |
tatttctaaatgactgtggaag |
42516197 |
T |
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