View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_39 (Length: 462)
Name: NF11930_high_39
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 227 - 450
Target Start/End: Complemental strand, 962133 - 961908
Alignment:
| Q |
227 |
gaatgtactatatttgaaatttgaaatgtaaggatataaatgcttctaattccaggtgcatgcaaattgagagtaaagttaatgcatgcatgcacg---- |
322 |
Q |
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| T |
962133 |
gaatgtactatatttgaaatttgaaatgtaaggata--aatccttctaattccaggtacatgcaaattgagagtaaagttaatgcatgcatgcatgcaca |
962036 |
T |
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| Q |
323 |
tagataattcagaatttgataataatataatataagtatattttagaagactggtttaataatacttctttcatttcatattaatagttaaattacattt |
422 |
Q |
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| T |
962035 |
tagataattcagaatttgataataatataatataagtatattttagaagactggtttaataatacttctttcgtttcatattaatagttaaattacattt |
961936 |
T |
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| Q |
423 |
ttgttcctttaagtatgttttctttcat |
450 |
Q |
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| T |
961935 |
ttgttcctttaagtatgttttctttcat |
961908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 962410 - 962191
Alignment:
| Q |
1 |
acaagaataaatccaagtattaaattgaacaaggaatttaaattgaataaggggaatgtctatttggataaactaacattattcttatctgatcatggag |
100 |
Q |
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| T |
962410 |
acaagaataaatcca-gtattaaattgaacaaggaatctaaattgaataaggggaatgtttatttggataaactaacattattcttatctgatcatggag |
962312 |
T |
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| Q |
101 |
gtgaaaggagaatttctt--gtgttactttttgtgttaggagattaagcctgcatgcgcaacaacttgcacatgctattattatgacatttaaattccat |
198 |
Q |
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| T |
962311 |
gtgaaaggagaatttcttgtgtgttactttttgtgttaggagattaagcatgcatgcgcaacaacttgcacatgc---tattatgacatttaaattccat |
962215 |
T |
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| Q |
199 |
ggctttaatttggttctttacgca |
222 |
Q |
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| T |
962214 |
ggctttaatttggttctttacgca |
962191 |
T |
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