View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_41 (Length: 448)
Name: NF11930_high_41
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 5331257 - 5331683
Alignment:
| Q |
1 |
gagtattcgtaactgagattgtagtgatcaaactctcttttcattgtgaatgcagttttgcaaatgatgcatgctctgcatttgaggactttgagaacaa |
100 |
Q |
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| T |
5331257 |
gagtattcgtaactgagattgtagtaatcaaactctcttttcattgtgaatgcagttttgcaaatgatgcatgctctgcatttgaggactttgagaacaa |
5331356 |
T |
|
| Q |
101 |
cccacagaacagtagtttgggttcgatgttaccatgcattaatgactcattctctggaaaattgatagctcaaattggcagcacaatccacactttcatt |
200 |
Q |
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| T |
5331357 |
cccacagaacagtagtttgggttcgatgttaccatgcattaatgactcattctctggaaaattgatagctcaaattggcagcacaatccacactttcatt |
5331456 |
T |
|
| Q |
201 |
gttgaggtacaannnnnnnnnnngtcattcacctattcaaaaggaaatgcatacaattgtttgatagtttctgatataatggtttgtttgtgtctcagtt |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331457 |
gttgaggtacaa--tttttttttgtcattcacctattcaaaaggaaatgcatacaattgtttgatagtttctgatataatggtttgtttgtgtctcagtt |
5331554 |
T |
|
| Q |
301 |
gaattctgacgtatcactcatgtatcagctgctaggaataggtgaagaaaatgaagaattaattggactcgtgaaaatttgtaaccctttctcagggcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331555 |
gaattctgacgtatcactcatgtatcagctgctaggaataggtgaagaaaatgaagaattaattggactcgtgaaaatttgtaaccctttctcagggcca |
5331654 |
T |
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| Q |
401 |
ccaaactacagctacagtccacacaattg |
429 |
Q |
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| T |
5331655 |
ccaaactacagctacagtccacacaattg |
5331683 |
T |
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