View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_42 (Length: 440)
Name: NF11930_high_42
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 37558627 - 37558216
Alignment:
| Q |
19 |
ttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagttcgaaatcctagttcataac |
118 |
Q |
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| T |
37558627 |
ttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagtttgaaatcctagttcataac |
37558528 |
T |
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| Q |
119 |
acaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggtttttcctaaaca |
218 |
Q |
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| T |
37558527 |
acaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggtttttcctaaaca |
37558428 |
T |
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| Q |
219 |
cactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcactggttttgt |
318 |
Q |
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| T |
37558427 |
cactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcactggttttgt |
37558328 |
T |
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| Q |
319 |
tgcttcaagaagaatctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagatcctgcaga |
418 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558327 |
tgcttcaagaagaacctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagatcctgcaga |
37558228 |
T |
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| Q |
419 |
atttcacctttg |
430 |
Q |
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|||||||||||| |
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| T |
37558227 |
atttcacctttg |
37558216 |
T |
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