View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_high_44 (Length: 428)

Name: NF11930_high_44
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_high_44
NF11930_high_44
[»] chr7 (17 HSPs)
chr7 (85-418)||(9266133-9266476)
chr7 (85-283)||(9281559-9281762)
chr7 (85-283)||(9292530-9292733)
chr7 (19-88)||(9267730-9267799)
chr7 (30-86)||(9263461-9263517)
chr7 (19-88)||(9263105-9263174)
chr7 (103-239)||(9232457-9232594)
chr7 (310-378)||(33202368-33202436)
chr7 (308-380)||(32584735-32584808)
chr7 (334-393)||(9281021-9281079)
chr7 (334-393)||(9291992-9292050)
chr7 (307-380)||(4501391-4501465)
chr7 (331-381)||(7637403-7637453)
chr7 (308-380)||(3676774-3676847)
chr7 (329-380)||(5825426-5825478)
chr7 (308-380)||(28517187-28517260)
chr7 (308-380)||(43857008-43857081)
[»] chr3 (2 HSPs)
chr3 (309-380)||(7900993-7901065)
chr3 (306-380)||(13582641-13582716)
[»] chr6 (6 HSPs)
chr6 (308-380)||(357617-357690)
chr6 (308-380)||(28543509-28543582)
chr6 (308-380)||(4206496-4206569)
chr6 (308-380)||(33220611-33220684)
chr6 (332-380)||(24016494-24016543)
chr6 (307-380)||(959713-959787)
[»] chr8 (4 HSPs)
chr8 (329-380)||(25021714-25021766)
chr8 (309-393)||(500362-500448)
chr8 (308-380)||(35739887-35739959)
chr8 (329-380)||(39434822-39434874)
[»] chr1 (4 HSPs)
chr1 (306-380)||(34644698-34644773)
chr1 (329-380)||(4861889-4861941)
chr1 (308-393)||(25375719-25375806)
chr1 (310-382)||(2764615-2764688)
[»] chr4 (7 HSPs)
chr4 (307-380)||(26521621-26521695)
chr4 (308-380)||(3330084-3330157)
chr4 (308-380)||(25504427-25504500)
chr4 (308-380)||(31847221-31847294)
chr4 (308-380)||(50000825-50000898)
chr4 (308-380)||(53619720-53619793)
chr4 (329-380)||(56462007-56462059)
[»] chr5 (6 HSPs)
chr5 (308-380)||(33691955-33692028)
chr5 (339-380)||(13166810-13166851)
chr5 (308-380)||(35310582-35310655)
chr5 (308-380)||(38446300-38446373)
chr5 (329-380)||(27336848-27336900)
chr5 (308-383)||(43129668-43129744)
[»] chr2 (8 HSPs)
chr2 (307-380)||(28225133-28225207)
chr2 (308-380)||(3825861-3825934)
chr2 (308-380)||(44686553-44686626)
chr2 (310-380)||(17344774-17344845)
chr2 (310-356)||(9685340-9685386)
chr2 (307-380)||(27502494-27502568)
chr2 (308-380)||(4412966-4413039)
chr2 (332-380)||(18744854-18744903)
[»] scaffold0031 (1 HSPs)
scaffold0031 (329-380)||(49570-49621)
[»] scaffold0110 (1 HSPs)
scaffold0110 (307-356)||(47464-47513)
[»] scaffold0148 (1 HSPs)
scaffold0148 (308-356)||(33383-33431)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 85 - 418
Target Start/End: Complemental strand, 9266476 - 9266133
Alignment:
Q  85 ctcatagctttattcgcagatcttattttataattctcttctatgagtgcacaattatcatctctttcatgttgcgtctattttgttcaaaccaaaacca 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9266476 ctcatagctttattcgcagatcttattttataattctcttctatgagtgcacaattatcatctctttcatgttgcgtctattttgttcaaaccaaaacca 9266377  T
Q  185 caaagaattattgtgaaatcacacataaatatataatcccatgtctaaaacacacacaaaaccctaatataattttaaaaacacacacaaataccttcat 284  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9266376 gaaagaatcattgtgaaatcacacataaatatataatcccatgtctaaaacacacacacaaccctaatataattttaaaaacacacacaaataccttcat 9266277  T
Q  285 ccgtatactcacaaataccttct--------tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacccggtcaaatccacacatgcat 376  Q
    ||||||||| |||||||||||||        |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9266276 ccgtatactgacaaataccttcttggcttcctgtcctacagtaaaagccctaacccctaatcccacaagtggtgaaacccggtcaaatccacacatgcat 9266177  T
Q  377 gtttccttgtacccatctg--gatcataacacttcaaccctttg 418  Q
    |||||||||||||||||||   ||||||||||||||| ||||||    
T  9266176 gtttccttgtacccatctgtatatcataacacttcaagcctttg 9266133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 85 - 283
Target Start/End: Complemental strand, 9281762 - 9281559
Alignment:
Q  85 ctcatagctttattcgcagatcttattttataattctcttctatgagtgcacaattatcatctctttcatgttgcgtctattttgttcaaaccaaaacca 184  Q
    |||||||||||||||  |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  9281762 ctcatagctttattctgagatcttattttatcattctcttgtatgagtgtacaattatcatctctttcattttgtgtctgttttgttcaaaccaaaacca 9281663  T
Q  185 caaagaattattgtgaaatcacacataaatat-ataatcc----catgtctaaaacacacacaaaaccctaatataattttaaaaacacacacaaatacc 279  Q
    |||||||| ||||| |||| |||||||||||| |||||||    ||||| ||||||||||||||| |||||||||||||| |||||||| || |||||||    
T  9281662 caaagaatcattgtaaaataacacataaatatgataatcccatgcatgtataaaacacacacaaagccctaatataatttaaaaaacactcataaatacc 9281563  T
Q  280 ttca 283  Q
    ||||    
T  9281562 ttca 9281559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 85 - 283
Target Start/End: Complemental strand, 9292733 - 9292530
Alignment:
Q  85 ctcatagctttattcgcagatcttattttataattctcttctatgagtgcacaattatcatctctttcatgttgcgtctattttgttcaaaccaaaacca 184  Q
    |||||||||||||||  |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  9292733 ctcatagctttattctgagatcttattttatcattctcttgtatgagtgtacaattatcatctctttcattttgtgtctgttttgttcaaaccaaaacca 9292634  T
Q  185 caaagaattattgtgaaatcacacataaatat-ataatcc----catgtctaaaacacacacaaaaccctaatataattttaaaaacacacacaaatacc 279  Q
    |||||||| ||||| |||| |||||||||||| |||||||    ||||| ||||||||||||||| |||||||||||||| |||||||| || |||||||    
T  9292633 caaagaatcattgtaaaataacacataaatatgataatcccatgcatgtataaaacacacacaaagccctaatataatttaaaaaacactcataaatacc 9292534  T
Q  280 ttca 283  Q
    ||||    
T  9292533 ttca 9292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 9267730 - 9267799
Alignment:
Q  19 atgaattctaagttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcactca 88  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9267730 atgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcactca 9267799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 9263461 - 9263517
Alignment:
Q  30 gttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcact 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9263461 gttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcact 9263517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 9263174 - 9263105
Alignment:
Q  19 atgaattctaagttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcactca 88  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  9263174 atgaattgtgagttaacttgtaaagtttaagaaactaaaaattaaaaaacagaatatgaattggcactca 9263105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 9232457 - 9232594
Alignment:
Q  103 gatcttattttataattctcttctatgagtgcacaattatcatctctttcatgttgcgtctattttgttcaaaccaaaaccacaaagaattattgtgaaa 202  Q
    ||||||||||||| ||||||||||||||||  |   ||||||| |||||| | | | ||||  ||| |||||||||||||||||||||||  |||| |||    
T  9232457 gatcttattttatcattctcttctatgagtttagggttatcatatctttcttctcgtgtctgctttattcaaaccaaaaccacaaagaatcgttgtaaaa 9232556  T
Q  203 tcacacataaatat-ataatcccatgtctaaaacacac 239  Q
    | |||||||| ||| | |||| ||||| ||||||||||    
T  9232557 taacacataagtataacaatctcatgtataaaacacac 9232594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 33202436 - 33202368
Alignment:
Q  310 tcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacccggtcaaatccacacatgcatgt 378  Q
    |||||| |||||||  | |||||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  33202436 tcctactgtaaaagccccaacccctaatcccacaagcggtgaaacccagtcaagtccacacatgcatgt 33202368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 32584735 - 32584808
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacccg-gtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||   |  ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  32584735 tgtcctaccgtaaaatccccgacccctaatcccacaagaggtgaaacccgagtcaagtccacacatgcatgttt 32584808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 9281079 - 9281021
Alignment:
Q  334 taatcccacaagtggtgaaacccggtcaaatccacacatgcatgtttccttgtacccatc 393  Q
    ||||||||| ||||  |||||||||||||||| |||||||||||||| ||||||||||||    
T  9281079 taatcccacgagtgaagaaacccggtcaaatc-acacatgcatgttttcttgtacccatc 9281021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 9292050 - 9291992
Alignment:
Q  334 taatcccacaagtggtgaaacccggtcaaatccacacatgcatgtttccttgtacccatc 393  Q
    ||||||||| ||||  |||||||||||||||| |||||||||||||| ||||||||||||    
T  9292050 taatcccacgagtgaagaaacccggtcaaatc-acacatgcatgttttcttgtacccatc 9291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 4501391 - 4501465
Alignment:
Q  307 ttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||||| |||||||| |  || |||||||||||||||||||||| ||| ||||| || ||||||||||||||    
T  4501391 ttgtcctacggtaaaaggcccgacacctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttt 4501465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 7637453 - 7637403
Alignment:
Q  331 ccctaatcccacaagtggtgaaacccggtcaaatccacacatgcatgtttc 381  Q
    |||||||| |||||| || |||||| |||||||||||||||||||||||||    
T  7637453 ccctaatctcacaaggggggaaaccgggtcaaatccacacatgcatgtttc 7637403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 3676774 - 3676847
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| ||||||||||  || |||||||||||||||||||||| ||| ||||| || ||||| ||||||||    
T  3676774 tgtcctacggtaaaaggaccgacacctaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttt 3676847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 5825426 - 5825478
Alignment:
Q  329 acccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||||||||||| ||| ||||| |||||||||||||||||    
T  5825426 acccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttt 5825478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 28517260 - 28517187
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||  |  |||||||| |||||||||||||||| ||| ||||| ||||||||| |||||||    
T  28517260 tgtcctactgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatgttt 28517187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 43857008 - 43857081
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||  |  ||||||||||||||||||||||||| ||| ||||| ||||| |||| ||||||    
T  43857008 tgtcctactgtaaaagccccgacccctaatcccacaagtggtgaaacccccgtcaagtccacgcatgtatgttt 43857081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 7900993 - 7901065
Alignment:
Q  309 gtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||  | |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  7900993 gtcctaccgtaaaagacccaacccctaatcccacaagtggtgaaaccccagtcaagtccacacatgcatgttt 7901065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 13582641 - 13582716
Alignment:
Q  306 cttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgttt 380  Q
    |||||||||| |||||||| || || |||||||||||||||| ||||||| ||||||| || ||||||||||||||    
T  13582641 cttgtcctacggtaaaaggcctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttt 13582716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 357690 - 357617
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaac-ccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||| ||  |||||||| ||||||||||||||||| || ||||| |||||||||||||||||    
T  357690 tgtcctaccgtaaaagcaccgacccctaaacccacaagtggtgaaactccagtcaagtccacacatgcatgttt 357617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 28543509 - 28543582
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgttt 380  Q
    |||| |||||||||||  || ||| ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  28543509 tgtcttaccgtaaaagtcctgacctctaatcccacaagtggtgaaacctcagtcaaatccacacatgcatgttt 28543582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 4206569 - 4206496
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||| || |  |||||||||||||||||||||| ||| ||||| || ||||||||||||||    
T  4206569 tgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttt 4206496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 33220684 - 33220611
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||  |  |||||||| |||||||||||||||| ||| ||||||| |||||||||||||||    
T  33220684 tgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaaattcacacatgcatgttt 33220611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 24016494 - 24016543
Alignment:
Q  332 cctaatcccacaagtggtgaaac-ccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  24016494 cctaatcccacaagtggggaaactccggtcaaattcacacatgcatgttt 24016543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 959713 - 959787
Alignment:
Q  307 ttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaac-ccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||||| |  || |||||||||| ||||||||||||  |  |||| |||||||||||||||||    
T  959713 ttgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaacttcaatcaagtccacacatgcatgttt 959787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 25021766 - 25021714
Alignment:
Q  329 acccctaatcccacaagtggtgaaac-ccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  25021766 acccctaatcccacaagtggtgaaactccggtcaagtccacacatgcatgttt 25021714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 500362 - 500448
Alignment:
Q  309 gtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatg-tttccttgtacccatc 393  Q
    |||||||||||||||| |  || |||||||||||||||||||||||| |  |||| || ||||||||||| ||||||| ||||||||    
T  500362 gtcctaccgtaaaaggcccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttccttctacccatc 500448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 35739959 - 35739887
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacccg-gtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||| |  |||  ||||||||| |||||||||||||  ||||| |||||||||||||||||    
T  35739959 tgtcctaccgtaaaaggcccgacct-taatcccactagtggtgaaaccccagtcaagtccacacatgcatgttt 35739887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 39434822 - 39434874
Alignment:
Q  329 acccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||||||||||| ||| ||||| | |||||||||||||||    
T  39434822 acccctaaacccacaagtggtgaaaccccagtcaagtacacacatgcatgttt 39434874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 34644698 - 34644773
Alignment:
Q  306 cttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||||  |  |||||||| |||||||||||||||| ||| ||||| |||||||||||||||||    
T  34644698 cttgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttt 34644773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 4861941 - 4861889
Alignment:
Q  329 acccctaatcccacaagtggtgaaac-ccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||||||    
T  4861941 acccctaatccaacaagtggtgaaacaccagtcaaatccacacatgcatgttt 4861889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 25375806 - 25375719
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaaccc-ggtcaaatccacacatgcatg-tttccttgtacccatc 393  Q
    ||||||||||||||||  || ||||||||||| || ||| ||||||||| |||||||||||| | |||||| ||||||| ||||||||    
T  25375806 tgtcctaccgtaaaagctctgacccctaatccgacgagtagtgaaaccctggtcaaatccacgcttgcatgttttccttctacccatc 25375719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 2764615 - 2764688
Alignment:
Q  310 tcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgtttcc 382  Q
    ||||||| |||||| || ||||||||| |||||||||||||||||| |  |||| | |||||||||||||||||    
T  2764615 tcctaccataaaagcaccaacccctaaacccacaagtggtgaaacctcaatcaagttcacacatgcatgtttcc 2764688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 26521621 - 26521695
Alignment:
Q  307 ttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaac-ccggtcaaatccacacatgcatgttt 380  Q
    |||||||||| ||||||| || ||||||||||||||||||| |||||| || ||||| |||| ||||||||||||    
T  26521621 ttgtcctaccataaaaggtctgacccctaatcccacaagtgatgaaactccagtcaagtccatacatgcatgttt 26521695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 3330084 - 3330157
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||  |  |||||||| |||||||||||||||| ||| ||||| |||||||||||| ||||    
T  3330084 tgtcctaccgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcacgttt 3330157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 25504427 - 25504500
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgttt 380  Q
    |||| |||||||||||| || || |||||||||||||||||||||||| | ||||| || | ||||||||||||    
T  25504427 tgtcataccgtaaaaggcctgacgcctaatcccacaagtggtgaaacctcagtcaagtctatacatgcatgttt 25504500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 31847221 - 31847294
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaaccc-ggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||  |  |||||||| |||||||||||||||||||  ||||| |||||||||||||||||    
T  31847221 tgtcctactgtaaaagcccccacccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatgttt 31847294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 50000898 - 50000825
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||  |  |||||| | |||||||||||||||| ||| ||||| |||||||||||||||||    
T  50000898 tgtcctaccgtaaaagcccccaccccttaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttt 50000825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 53619720 - 53619793
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||  |  ||| |||| |||||||||||||||| ||| ||||| |||||||||||||||||    
T  53619720 tgtcctactgtaaaagcccccacctctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttt 53619793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 56462059 - 56462007
Alignment:
Q  329 acccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgttt 380  Q
    ||||||||||| |||| |||||||||| | ||||| |||||||||||||||||    
T  56462059 acccctaatccaacaaatggtgaaacctcagtcaagtccacacatgcatgttt 56462007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 33692028 - 33691955
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||  |  |||||||| |||||||||||||||||| | ||||| |||||||||||||||||    
T  33692028 tgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttt 33691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 13166851 - 13166810
Alignment:
Q  339 ccacaagtggtgaaacccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  13166851 ccacaagtggtgaaacccagtcaagtccacacatgcatgttt 13166810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 35310582 - 35310655
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||||||||||||  |  |||||||| |||||||||||||||| |||  |||| |||||||||||||||||    
T  35310582 tgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttt 35310655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 38446300 - 38446373
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgttt 380  Q
    |||| |||||||||||  | ||| ||||| |||||||||||||||||| | ||||| |||||||||||||||||    
T  38446300 tgtcataccgtaaaagccccaactcctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttt 38446373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 27336848 - 27336900
Alignment:
Q  329 acccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||||||||||| ||| ||||| |||||||||||||||||    
T  27336848 acccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttt 27336900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 43129668 - 43129744
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgtttcct 383  Q
    ||||| ||||||||||  |  ||||||||||| ||||||||||||| ||| ||||| | ||||||||||| ||||||    
T  43129668 tgtccaaccgtaaaagttccgacccctaatccaacaagtggtgaaaccccagtcaatttcacacatgcatttttcct 43129744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 28225133 - 28225207
Alignment:
Q  307 ttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||||  ||||| ||||| ||||||||| |||||| |||  |||| |||||||||||||||||    
T  28225133 ttgtcctaccgtaaaagccctaactcctaagcccacaagtagtgaaaccccattcaagtccacacatgcatgttt 28225207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 3825861 - 3825934
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacc-cggtcaaatccacacatgcatgttt 380  Q
    |||| |||||||||||  || ||||||||||||||||| ||||||||| |  |||| |||||||||||||||||    
T  3825861 tgtcataccgtaaaagtcctgacccctaatcccacaaggggtgaaacctcaatcaagtccacacatgcatgttt 3825934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 44686553 - 44686626
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    ||||||| ||||||||  |  |||||||| |||||||||||||||| ||| ||||| |||||||||||||||||    
T  44686553 tgtcctatcgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttt 44686626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 17344774 - 17344845
Alignment:
Q  310 tcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||| |||||||| || || ||||||||||||||| |||||| ||| ||||| || ||||||||||||||    
T  17344774 tcctacggtaaaaggtctgacacctaatcccacaagttgtgaaaccccagtcaagtctacacatgcatgttt 17344845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 9685386 - 9685340
Alignment:
Q  310 tcctaccgtaaaaggactaacccctaatcccacaagtggtgaaaccc 356  Q
    |||||| |||||||| || || |||||||||||||||||||||||||    
T  9685386 tcctacggtaaaaggtctgacacctaatcccacaagtggtgaaaccc 9685340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 27502494 - 27502568
Alignment:
Q  307 ttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaacccggt-caaatccacacatgcatgttt 380  Q
    |||||||| ||||||||  || |||||||| |||||||||||||||||||  | ||  |||||||||||||||||    
T  27502494 ttgtcctatcgtaaaagctctgacccctaaacccacaagtggtgaaaccccattcaggtccacacatgcatgttt 27502568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 4413039 - 4412966
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||| |||||||| || || | |||||||||||||||||||| ||| ||||| || ||||| ||||||||    
T  4413039 tgtcctacggtaaaaggtctgacacttaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttt 4412966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 18744903 - 18744854
Alignment:
Q  332 cctaatcccacaagtggtgaaa-cccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||||||||| ||| ||||| || ||||||||||||||    
T  18744903 cctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttt 18744854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 49570 - 49621
Alignment:
Q  329 acccctaatcccacaagtggtgaaacccggtcaaatccacacatgcatgttt 380  Q
    |||||||||||||||||| ||||||| |  |||| |||||||||||||||||    
T  49570 acccctaatcccacaagtagtgaaactcaatcaagtccacacatgcatgttt 49621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 47513 - 47464
Alignment:
Q  307 ttgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaaccc 356  Q
    |||||||||||||||||    || ||||||||||||||||||||||||||    
T  47513 ttgtcctaccgtaaaagtctcaatccctaatcccacaagtggtgaaaccc 47464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 33383 - 33431
Alignment:
Q  308 tgtcctaccgtaaaaggactaacccctaatcccacaagtggtgaaaccc 356  Q
    ||||||||||||||||| |  || |||||||||| ||||||||||||||    
T  33383 tgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaaccc 33431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University