View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_high_47 (Length: 422)
Name: NF11930_high_47
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_47 |
 | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 45845637 - 45846030
Alignment:
| Q |
19 |
acaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgat |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45845637 |
acaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgat |
45845736 |
T |
|
| Q |
119 |
ggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45845737 |
ggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaaaatcatgattt |
45845836 |
T |
|
| Q |
219 |
cataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccacccca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45845837 |
cataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccacccca |
45845936 |
T |
|
| Q |
319 |
tgttttcttgtgtgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacacctttg |
412 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45845937 |
tgttttcttgtgcgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacacctttg |
45846030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 339
Target Start/End: Complemental strand, 2990611 - 2990296
Alignment:
| Q |
24 |
agagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaaa |
123 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||| || |||||||| || ||||||| |||||| | || || ||||| |
|
|
| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
2990512 |
T |
|
| Q |
124 |
aatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgatttcatac |
223 |
Q |
| |
|
||| |||| ||| | ||| ||||||||||| | |||||||| ||||| ||||| |||||| | ||| || ||||| | ||| ||||||||||| ||| |
|
|
| T |
2990511 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
2990412 |
T |
|
| Q |
224 |
caccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccaccccatgttt |
323 |
Q |
| |
|
||||||||||| || ||||| |||| || ||||| | |||||||| | ||| ||||||||| ||||||||| || |||| |||| |||||||| |
|
|
| T |
2990411 |
caccaccattcgagacaaaccgaaatgcagcttggaattgctaaattcaaaagcgatttccatcctttgaaacaagcagaggaaattccactccatgttt |
2990312 |
T |
|
| Q |
324 |
tcttgtgtgtgccaga |
339 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2990311 |
tcttgtgtgttccaga |
2990296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 28505699 - 28505852
Alignment:
| Q |
95 |
gaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaaca |
194 |
Q |
| |
|
||||||| || ||| | |||||||||||||| ||| | |||||| || |||||||| | |||||||| ||||||| |||||| ||||||| | ||| | |
|
|
| T |
28505699 |
gaaacaccaagactaagtgatgatggaaaaacataaaccaaagatgttgtttgaataagtattcccattgaagcaattgttgcttttggattaaccaaaa |
28505798 |
T |
|
| Q |
195 |
aaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
248 |
Q |
| |
|
||||| | || ||||||| ||||||||||||||||| || ||||| |||| |
|
|
| T |
28505799 |
gtccacacatcattatcatgaactcataccaccaccattcgagacaaaccgaaa |
28505852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 24478 - 24396
Alignment:
| Q |
21 |
aagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacacta |
103 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| || ||||||||| |
|
|
| T |
24478 |
aagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatcatgttaccaactcttgttgaaacacta |
24396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 24143 - 24088
Alignment:
| Q |
356 |
atcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacaccttt |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
24143 |
atcaaagaagcaacaaggttgaaatttgtccataccccacttaaagcaactccttt |
24088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 248
Target Start/End: Complemental strand, 51875145 - 51874980
Alignment:
| Q |
83 |
ccaactctagtggaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttg |
182 |
Q |
| |
|
||||||||||| ||||||| |||||| | || |||||||||| ||| | ||||||||| |||||||| | ||| ||||| |||| || ||||| ||| |
|
|
| T |
51875145 |
ccaactctagttgaaacaccaaaactaagagaagatggaaaaacataaaccaaagaagttgtttgaataagaatacccattgaagaaatggttgactttg |
51875046 |
T |
|
| Q |
183 |
gatttatcaacaaaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
248 |
Q |
| |
|
| || | ||| | ||||| || | ||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
51875045 |
ggttgaccaaaagtccacacaaaattatcatgagttcataccaccaccattctaaacaaacagaaa |
51874980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University