View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_50 (Length: 419)
Name: NF11930_high_50
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 8909108 - 8908757
Alignment:
| Q |
1 |
atatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909108 |
atatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctc |
8909009 |
T |
|
| Q |
101 |
tttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909008 |
tttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgcaaca |
8908909 |
T |
|
| Q |
201 |
agtgcttatgctgaaaatcactactgcgttttctgatgctagtctttctattctctctaatgggtcacacatcattgttggggtcatgtggtagtttccc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8908908 |
agtgcttatgctgaaaatcactactgcgttttctgatgctagtctttctattctctctaatgggtcacacatcattgttggggtcatgtggtagtttccc |
8908809 |
T |
|
| Q |
301 |
catgaggctgtttggtaatgcannnnnnngaacttattatagtaatgtagct |
352 |
Q |
| |
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||||| |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
8908808 |
catgatgctgtttggtaatgcatttttttgaacttaatatagtaatgtagct |
8908757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7300316 - 7300096
Alignment:
| Q |
1 |
atatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctc |
100 |
Q |
| |
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|||||| |||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||| ||||| | ||||| | ||||| | | ||| |
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| T |
7300316 |
atatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaaccggaagtgatgttgaatttccaagtaacctcatcaatactc |
7300217 |
T |
|
| Q |
101 |
tttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgcaaca |
200 |
Q |
| |
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| T |
7300216 |
ttttcatttctttccctttaggatcttcatcaacttcatgaaccattgcattcactcccattccacagaacaaactcttcattgcatgacacatacagca |
7300117 |
T |
|
| Q |
201 |
agtgcttatgctgaaaatcac |
221 |
Q |
| |
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| | ||||||||||| ||||| |
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| T |
7300116 |
actacttatgctgaatatcac |
7300096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7333359 - 7333579
Alignment:
| Q |
1 |
atatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctc |
100 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||| ||||| | ||||| | ||||| | ||||| |
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| T |
7333359 |
atatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctc |
7333458 |
T |
|
| Q |
101 |
tttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgcaaca |
200 |
Q |
| |
|
||| | || ||| ||| | ||||||||||||| ||||||||| || |||||||||||||||||||||||| ||||| || ||||| ||||| ||||| |
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|
| T |
7333459 |
ttttcatttgtttccctttaggatcttcatcaacttcatgaaccattgcattcactcccattccacagaacaaactcttcattgcatggcacatacaaca |
7333558 |
T |
|
| Q |
201 |
agtgcttatgctgaaaatcac |
221 |
Q |
| |
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| | ||||||||||| ||||| |
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| T |
7333559 |
actacttatgctgaatatcac |
7333579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7340148 - 7340368
Alignment:
| Q |
1 |
atatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctc |
100 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||| ||||| | ||||| | ||||| | ||||| |
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| T |
7340148 |
atatgaaaagccaaaactctatccatagaaccaactaatttcccaccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctc |
7340247 |
T |
|
| Q |
101 |
tttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgcaaca |
200 |
Q |
| |
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||| | |||||| ||| | ||||||||||||| ||||||||| || |||||||||||| ||||||||||| ||||| || ||||||||||| || || |
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| T |
7340248 |
ttttcatttctttccctttaggatcttcatcaacttcatgaaccattgcattcactcccataccacagaacaaactcttcattgcatgacacatacagca |
7340347 |
T |
|
| Q |
201 |
agtgcttatgctgaaaatcac |
221 |
Q |
| |
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| | ||||||||||| ||||| |
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|
| T |
7340348 |
actacttatgctgaatatcac |
7340368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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