View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_61 (Length: 392)
Name: NF11930_high_61
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_61 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 8349386 - 8349002
Alignment:
| Q |
1 |
cattacaatgacctagctactctacttctcacaacaaatgatgatgcagttagaaacattttctcaacaaacacacctcatgaatatcgacctttttcaa |
100 |
Q |
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| T |
8349386 |
cattacaatgacctagctactcttctactcacaacaaatgatgatgcagttagaaacattttctcaacaaacacacctcatgaatatcaacctttttcaa |
8349287 |
T |
|
| Q |
101 |
tcttgatatttttcacactatatcgcatattaggtttaatcacttttggcattgctgttccatcaggacnnnnnnnacctatcatattaatcggttcagg |
200 |
Q |
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| T |
8349286 |
tcttgatatttttcacactatattgcatattaggtttaatcacttttggcattgctgttccatcaggactttttttacctatcatattaatcggttcggg |
8349187 |
T |
|
| Q |
201 |
ttatggacgtctcctcggaatcataatgaggtcttacacaaatattgatcatggtttgttagctgttcttggtgcagcttccttgatggcagggtcaatg |
300 |
Q |
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| T |
8349186 |
ttatggacgtctcctcggaatcataatgaggccttacacaaatattgatcatggtttgttagctgttcttggtgcagcttccttgatggcagggtcaatg |
8349087 |
T |
|
| Q |
301 |
agaatgactgtttcactttgtgttatttttcttgaacttaccaacaatcttcttttgctaccgataacaatgatcgttcttctca |
385 |
Q |
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| T |
8349086 |
agaatgactgtttcactttgtgttatctttcttgaacttaccaacaatcttcttttgctaccgataacaatgatcgttcttctca |
8349002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 380
Target Start/End: Original strand, 10399770 - 10399893
Alignment:
| Q |
257 |
tgttagctgttcttggtgcagcttccttgatggcagggtcaatgagaatgactgtttcactttgtgttatttttcttgaacttaccaacaatcttctttt |
356 |
Q |
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| T |
10399770 |
tgtttgctgtacttggtgcagcctccctcatggctggttccatgaggatgactgtatccctttgtgtgattttccttgaacttaccagcaatctgcttct |
10399869 |
T |
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| Q |
357 |
gctaccgataacaatgatcgttct |
380 |
Q |
| |
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|| || ||||||||||| ||||| |
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| T |
10399870 |
actgccaataacaatgattgttct |
10399893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 10399529 - 10399601
Alignment:
| Q |
16 |
gctactctacttctcacaacaaatgatgatgcagttagaaacattttctcaacaaacacacctcatgaatatc |
88 |
Q |
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||||||||||| || || || ||||| ||||| ||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
10399529 |
gctactctactgcttacgactaatgacgatgctgttcgaaacatattctcaagtaacacacctcatgaatatc |
10399601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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