View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_62 (Length: 391)
Name: NF11930_high_62
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_62 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 27470492 - 27470844
Alignment:
| Q |
14 |
atggacatcagctgaccgatgtgttaacgaagggtttaccgaaatagcgatttaaccaacttacttgcaagttttgaatgattggtatacattcatcagc |
113 |
Q |
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| T |
27470492 |
atggacatcagctgaccgatgtgttaacgaagggtttaccaaaatagcgatttaaccaacttacttgcaagttttgaatgattggtatacattcatcagc |
27470591 |
T |
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| Q |
114 |
ttgaggggaagtgttgtaaatattaatatttgtatacgagaccaattagccaaactcattaggtttagatttgtctctatttaagcaagttaaatttaaa |
213 |
Q |
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| T |
27470592 |
ttgaggggaagtgttgtaaatattaatatttgtatacgagaccaattagccaaactcattaggtttagatttgtctctatttaagcaagttaaatttaaa |
27470691 |
T |
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| Q |
214 |
gtattaaaatttacaactttaaaataatattcagaaaataatttcacatttctacattcattctcattctatcgtttgatgtaatgatctttcccatatc |
313 |
Q |
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| T |
27470692 |
gcattataatttacaactttaaaataatattcagaaaatcatttcacatttctatgttcagtctcattctatcgtttgatgtaatgatttttcccatatc |
27470791 |
T |
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| Q |
314 |
aatacaaaaattatttttcagcttctgaattttctctcttccatagtctctatc |
367 |
Q |
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| T |
27470792 |
aatacaaaaatta-ttttcagcctctgaattttctctcttccgtagtctctatc |
27470844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 28093341 - 28093284
Alignment:
| Q |
274 |
ttctcattctatcgtttgatgtaatgatctttcccatatcaatacaaaaattattttt |
331 |
Q |
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| T |
28093341 |
ttctcattctatcatttgatgtaatgaactttcgcatatcaatacaaaatttattttt |
28093284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 4464770 - 4464871
Alignment:
| Q |
31 |
gatgtgttaacgaagggtttaccgaaatagcgatttaaccaacttacttgcaagttttgaatgattggtatacattcatcagcttgaggggaagtgttgt |
130 |
Q |
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| T |
4464770 |
gatgtgttaacaaagggtttaccaacaaaaagattcaaccaacttacttgcaagcttagaatgatagatatctattcaccagcttgagagggagtgttgt |
4464869 |
T |
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| Q |
131 |
aa |
132 |
Q |
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| T |
4464870 |
aa |
4464871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 17219552 - 17219599
Alignment:
| Q |
222 |
atttacaactttaaaataatattcagaaaataatttcacatttctaca |
269 |
Q |
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| T |
17219552 |
atttacatctttaaaataatattcagaaaatcatttcacaattctaca |
17219599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 30996869 - 30996930
Alignment:
| Q |
74 |
ttacttgcaagttttgaatgattggtatacattcatcagcttgaggggaagtgttgtaaata |
135 |
Q |
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| T |
30996869 |
ttactttcaagttgagaatgatagatatccattcaccagcttgagaggaagtgttgtaaata |
30996930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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