View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_68 (Length: 381)
Name: NF11930_high_68
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 55337614 - 55337960
Alignment:
| Q |
19 |
agttgtctgttccatctgttggaagaagaagaatcagcttagttgccacaacataaaacttgaatctgtggaattcaaatagcatatatatatgcacatc |
118 |
Q |
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| T |
55337614 |
agttgtctgttccatctgttggaagaagaagaatcagcttagttgccacaacataaaacttgaatctgtggaattcaaatagcatatatgca--catatc |
55337711 |
T |
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| Q |
119 |
catccacttgctcaaaatcaaaagcgaaggtattgaattgactgcaacagccagccattgacttagtcgtcattagaagaatgatcgatcgatcaatcat |
218 |
Q |
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| T |
55337712 |
catccacttgctcaaaatcaaaagcgaaggtattgaattgactgcaacagccagccattgacttagtcttcattagaagaatg------------atcat |
55337799 |
T |
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| Q |
219 |
aatg--tttactaagcatatcaatcaactcttcacattttcaaaaaccttccc---------tacaatgcaacactagacaagacaaggccatgatcatt |
307 |
Q |
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| T |
55337800 |
aatgtttttattaagcat----atcaactcttcacattttcaaaaaccttccctacaatttatacaatgcaacactagac-agacaaggccatgatcatt |
55337894 |
T |
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| Q |
308 |
gtctctttaatttctttttctttgctaatttattttagttgtgcatttcaattctagctctctgct |
373 |
Q |
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| T |
55337895 |
gtctctttaatttctttttgtttgctaatttattttagttgtgcatttcaattctagctatctgct |
55337960 |
T |
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