View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_69 (Length: 375)
Name: NF11930_high_69
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 5053122 - 5052782
Alignment:
| Q |
16 |
tgaagaattgatggggctgtgaaatttattttgggctagttgttttaaaaatagactgatgaagttctctagtcccctcctttgatgaattggatcaaag |
115 |
Q |
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| T |
5053122 |
tgaagaattgatggggctgtgaaatttattttgggctagttgtttttaaaatcaactgatgaagttctctagtcccctcctttgatgaattggatcaaag |
5053023 |
T |
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| Q |
116 |
tcaataatgatggtgcattgaccaataaccctgttcaagcttcttctggggcatacttaaagactcaaaatggtatatgcaaaggtaga-ttaggcagaa |
214 |
Q |
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| T |
5053022 |
tcaataatgatggtgcattgaccaataaccctgttcaagcttcttctggggcatacttatagactc-aaatggtatatgcaaaggtagatttaggcagaa |
5052924 |
T |
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| Q |
215 |
tgttcaaactgattctcctttcactactaagattgttggtgcgctataatgataactacttcaaaaggctagcatagcttatggctagaagtgactctca |
314 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052923 |
tgttcaaactgattctcctttcactactaagatttttggtgcgctataatgataactacttcaaaaggctagcatagcttatggctagaagtgactctca |
5052824 |
T |
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| Q |
315 |
actagttttgttagcttttcaatcaaaatctttggttctttg |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052823 |
actagttttgttagcttttcaatcaaaatctttggttctttg |
5052782 |
T |
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