View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_high_7 (Length: 805)

Name: NF11930_high_7
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_high_7
NF11930_high_7
[»] scaffold0025 (1 HSPs)
scaffold0025 (15-429)||(17973-18389)
[»] chr6 (8 HSPs)
chr6 (426-803)||(16015113-16015498)
chr6 (426-707)||(18344612-18344895)
chr6 (429-519)||(10095691-10095781)
chr6 (429-520)||(10079022-10079113)
chr6 (436-498)||(10085976-10086038)
chr6 (429-498)||(10103210-10103279)
chr6 (429-490)||(10076591-10076652)
chr6 (464-509)||(10083324-10083369)
[»] chr2 (9 HSPs)
chr2 (426-805)||(35611398-35611784)
chr2 (426-805)||(27194227-27194610)
chr2 (426-805)||(27844041-27844424)
chr2 (426-805)||(39441159-39441546)
chr2 (426-516)||(28665096-28665186)
chr2 (426-516)||(37823930-37824020)
chr2 (426-516)||(41919097-41919187)
chr2 (426-521)||(19817013-19817113)
chr2 (428-570)||(21396542-21396688)
[»] chr5 (5 HSPs)
chr5 (426-805)||(14190890-14191277)
chr5 (426-516)||(37374163-37374253)
chr5 (426-516)||(27882313-27882403)
chr5 (426-516)||(8427485-8427575)
chr5 (81-181)||(2996600-2996700)
[»] chr4 (8 HSPs)
chr4 (426-805)||(31921470-31921856)
chr4 (426-707)||(617670-617956)
chr4 (426-516)||(13345165-13345255)
chr4 (426-516)||(35857136-35857226)
chr4 (426-516)||(49785752-49785842)
chr4 (426-570)||(49711342-49711490)
chr4 (564-625)||(5337534-5337595)
chr4 (537-570)||(13345106-13345139)
[»] scaffold0356 (1 HSPs)
scaffold0356 (426-805)||(15126-15512)
[»] chr8 (10 HSPs)
chr8 (426-805)||(33861212-33861602)
chr8 (426-516)||(7823060-7823150)
chr8 (426-516)||(25217465-25217555)
chr8 (426-516)||(30326695-30326785)
chr8 (426-516)||(25207946-25208037)
chr8 (678-768)||(5198726-5198816)
chr8 (678-768)||(5195270-5195360)
chr8 (773-805)||(5187262-5187294)
chr8 (730-768)||(1795686-1795724)
chr8 (730-768)||(6231792-6231830)
[»] chr3 (5 HSPs)
chr3 (426-805)||(41763194-41763584)
chr3 (426-516)||(34002-34092)
chr3 (426-516)||(52919256-52919346)
chr3 (465-516)||(10967722-10967772)
chr3 (537-570)||(10967797-10967830)
[»] chr1 (3 HSPs)
chr1 (426-805)||(2330922-2331307)
chr1 (426-707)||(48233865-48234149)
chr1 (426-516)||(6309894-6309984)
[»] scaffold0090 (1 HSPs)
scaffold0090 (426-516)||(47860-47950)
[»] chr7 (7 HSPs)
chr7 (426-516)||(12780048-12780138)
chr7 (426-516)||(12784902-12784992)
chr7 (426-516)||(7037949-7038039)
chr7 (426-515)||(9000044-9000133)
chr7 (428-568)||(45122207-45122351)
chr7 (535-570)||(9000157-9000192)
chr7 (730-768)||(5178974-5179012)
[»] scaffold0073 (2 HSPs)
scaffold0073 (426-516)||(980-1070)
scaffold0073 (426-570)||(33104-33253)
[»] scaffold0499 (2 HSPs)
scaffold0499 (428-515)||(10423-10510)
scaffold0499 (535-568)||(10366-10399)
[»] scaffold0107 (1 HSPs)
scaffold0107 (465-570)||(43147-43255)


Alignment Details
Target: scaffold0025 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 18389 - 17973
Alignment:
Q  15 ataaacatcacgattttgggatacatattaagtaactgattgtcgagttaaatagtcgttttcacgtctcatataatacacatcttatgattaggtaaga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18389 ataaacatcacgattttgggatacatattaagtaactgattgtcgagttagatagtcgttttcacatctcatataatacacatcttatgattaggtaaga 18290  T
Q  115 atgtcatcttaacatggaatatcgtaacaagtctaactccatcaagtacctttttaagtatgtgaactacagtcctggtaaggcaacaataaaggtgcaa 214  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||| ||    
T  18289 atgtcatcttaacatggaatatcg-aacaagtctaactccatcaagtacctttttaagtatgtgaactaaggttctgataaggcaacaataaaggtgtaa 18191  T
Q  215 gttgatggtgaaaatcatggcaaatttaagccaatagattaaataaagcagtgccatgatagttgatatatttcactttgcgaggctatttgaagaatgt 314  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  18190 gttgatggtgaaaatcatgacaaatttaacccaatagattaaataaagcagtgctatgatagttgatatatttcaccttgcgaggctatttgaagaatgt 18091  T
Q  315 tttcttttgatatttaccacaaatggcctattgtccttaagtcgacaaatcatt---ataatgaacaatgtttttcatttggagataatcatgacattaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||    
T  18090 tttcttttgatatttaccacaaatggcctattgtccttaagtcgacaaatcatttgcataatgaacaatgtttttcatttggagataatcgtgacattaa 17991  T
Q  412 gttaattatgcggtataa 429  Q
    |||||||||| |||||||    
T  17990 gttaattatggggtataa 17973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 235; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 426 - 803
Target Start/End: Original strand, 16015113 - 16015498
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt---agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa- 521  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16015113 ataaataatggcttgagaaatcctttaaaaataagcttatttttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaac 16015212  T
Q  522 ----atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggca 617  Q
        ||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||    
T  16015213 tttaatatcatttttt-ccgttgcattgcatatattctcttactatcatttttagtttttatgacaaagacaaaagtgaaaataggcatgtttcaagaca 16015311  T
Q  618 taatgatatgnnnnnnnnaaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagttg 716  Q
    |||||||||         ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||    
T  16015312 taatgatatattttttttaaggctagaacatgttgtaattgtcattgatgagaattagaacaaatggcgtgtcattatgcaactttaaaaggaaaagctg 16015411  T
Q  717 cacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccact 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| ||||||||    
T  16015412 cacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatctcgccactgaaatatgctttgttagtgttatctccact 16015498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 426 - 707
Target Start/End: Complemental strand, 18344895 - 18344612
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta---- 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||        
T  18344895 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaaacttttttcgattaagaattgagtcgtaactt 18344796  T
Q  521 -aatatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
     |||||||       ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||    
T  18344795 taatatca-ttttttccgttgcattgcatatattctcttactatcaattttagtttttatgacaaagatagaagtgaaaatagacatgtttcaagacata 18344697  T
Q  620 atgatatgnnnnnnnnaaggccagaacatgttgtaa-tgtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaag 707  Q
    ||||| |         ||||||| |||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| ||||    
T  18344696 atgattt---ttttttaaggccaaaacatgttgtaattgtcattgat-agaattagaacaaatggtgtgtcattatgcaactttgaaag 18344612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 519
Target Start/End: Complemental strand, 10095781 - 10095691
Alignment:
Q  429 aataatggcttgggaaatcctttacaaataagcttattttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagttgt 519  Q
    ||||||| |||||||||||||| ||||||||| | |||| ||||||||| |||||||||||||||||||| |||||||||| |||||||||    
T  10095781 aataatgacttgggaaatccttcacaaataagttcatttattagtttgaattaagctgaaagaagcttttatcgattaagagttgagttgt 10095691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 10079113 - 10079022
Alignment:
Q  429 aataatggcttgggaaatcctttacaaataagcttattttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta 520  Q
    ||||||| ||||| |||||||| ||||||||| | |||| ||||||||| |||| ||||||||||||||| |||||||||| ||||||||||    
T  10079113 aataatgacttggaaaatccttcacaaataagttcatttattagtttgaattaaactgaaagaagcttttatcgattaagagttgagttgta 10079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 10086038 - 10085976
Alignment:
Q  436 gcttgggaaatcctttacaaataagcttattttttagtttgagttaagctgaaagaagctttt 498  Q
    ||||||||||||||| | ||||||||| |||||| ||||||||||||||||||| ||||||||    
T  10086038 gcttgggaaatccttcataaataagctgatttttgagtttgagttaagctgaaataagctttt 10085976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 10103279 - 10103210
Alignment:
Q  429 aataatggcttgggaaatcctttac-aaataagcttattttttagtttgagttaagctgaaagaagctttt 498  Q
    ||||||| |||||||||||||| || ||||||||| ||||||||||| |||||||| ||||||||||||||    
T  10103279 aataatgacttgggaaatccttcactaaataagctgattttttagtt-gagttaagttgaaagaagctttt 10103210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 490
Target Start/End: Complemental strand, 10076652 - 10076591
Alignment:
Q  429 aataatggcttgggaaatcctttacaaataagcttattttttagtttgagttaagctgaaag 490  Q
    ||||||| |||||||||||||| ||||||||  | |||| ||||||||| ||||||||||||    
T  10076652 aataatgacttgggaaatccttcacaaataacttcatttattagtttgaattaagctgaaag 10076591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 509
Target Start/End: Complemental strand, 10083369 - 10083324
Alignment:
Q  464 attttttagtttgagttaagctgaaagaagcttttttcgattaaga 509  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  10083369 atttattagtttgaattaagctgaaagaagcttttatcgattaaga 10083324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 426 - 805
Target Start/End: Complemental strand, 35611784 - 35611398
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||       
T  35611784 ataaagaattgcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagtcgtaattt 35611685  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||    
T  35611684 taatatcatttttc-ccgttgcattgcatatattctcttactatcatttttagtttatatgacaaagacggaagtgaaaataggcatgtttcaagacata 35611586  T
Q  620 atgatatgnnnnnnnna-aggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagttgc 717  Q
    |||||||         | |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  |||    
T  35611585 atgatattttttttttataggccataacatgttgtaattgtcattgatgagaattagaacaaatggcgtgtcattatgcaactttaaaaggaaaaactgc 35611486  T
Q  718 acttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35611485 acttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttatctccactgc 35611398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 426 - 805
Target Start/End: Complemental strand, 27194610 - 27194227
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||       
T  27194610 ataaataatggcttgggaaatcctttacaaataagtttatttttttagtttgagttaagctgaaagatgcttttttcgattaagaattgagtcgtaactt 27194511  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||| ||||    
T  27194510 taatatcattttttcctgttgcattgcatatattctcttactatcatttttagtttttatgacagagacagaattgaaaatagacatgtttcaagacata 27194411  T
Q  620 atgatatgnnnnnnnnaaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagttgca 718  Q
    ||||| |         ||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||| |||| ||||| ||||    
T  27194410 atgattt--tttttttaaggccagaacatgttgtaattgtcattgat-agaattagaacaaatggtgtgtcattatgcaactttgaaaggaaaagctgca 27194314  T
Q  719 cttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27194313 cttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgactccactgc 27194227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 426 - 805
Target Start/End: Complemental strand, 27844424 - 27844041
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||       
T  27844424 ataaataatggcttgggaaatcctttacaaataagtttatttttttagtttgagttaagctgaaagatgcttttttcgattaagaattgagtcgtaactt 27844325  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||| ||||    
T  27844324 taatatcattttttcctgttgcattgcatatattctcttactatcatttttagtttttatgacagagacagaattgaaaatagacatgtttcaagacata 27844225  T
Q  620 atgatatgnnnnnnnnaaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagttgca 718  Q
    ||||| |         ||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||| |||| ||||| ||||    
T  27844224 atgattt--tttttttaaggccagaacatgttgtaattgtcattgat-agaattagaacaaatggtgtgtcattatgcaactttgaaaggaaaagctgca 27844128  T
Q  719 cttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27844127 cttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgactccactgc 27844041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 426 - 805
Target Start/End: Original strand, 39441159 - 39441546
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||  ||||       
T  39441159 ataaagaatggcttggaaaattatttacaaataagcttatttttttagtttgagtaaagctgaaagaagcttttttcgattaagaattgagccgtaattt 39441258  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  39441259 taatatcatttttt-ccgttgcattgcatatattctattactatcatttttagtttatatgacaaagacagaagtgaaaataggcatgtttcaagacata 39441357  T
Q  620 atgatatgnnnnnnnn---aaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagtt 715  Q
    |||||||            ||||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |    
T  39441358 atgatatttcttttttttaaaggccataacatgctgtaattgtcattgatgagaattagaacaaatggcgtgtcattatgcaactttaaaaggaaaagct 39441457  T
Q  716 gcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39441458 gcacttaaa-tgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccacttagatatgctttgttagtgttgtctccactgc 39441546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 28665096 - 28665186
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28665096 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaagaattgagt 28665186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 37823930 - 37824020
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37823930 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaagaattgagt 37824020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 41919097 - 41919187
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  41919097 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaaaaagctttttt-gattaagaattgagt 41919187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 426 - 521
Target Start/End: Original strand, 19817013 - 19817113
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt--agtttga---gttaagctgaaagaagcttttttcgattaagaattgagttgta 520  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  ||||| |   ||||||||||||||||||||||||||||||||||||||| |||    
T  19817013 ataaataatggcttggaaaatcctttacaaataagcttattttttttagttttattagttaagctgaaagaagcttttttcgattaagaattgagtcgta 19817112  T
Q  521 a 521  Q
    |    
T  19817113 a 19817113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 428 - 570
Target Start/End: Complemental strand, 21396688 - 21396542
Alignment:
Q  428 aaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta-----a 521  Q
    ||||| |||||||||||| |||| ||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||  |||     |    
T  21396688 aaatagtggcttgggaaaaccttaacaaacaagcttatttttttagttcgagttaagctgaaagaagct-ttttcgattaagaattaagccgtaacttta 21396590  T
Q  522 atatcannnnnnnccgttgcattgtatatattctcttactatcattttt 570  Q
    ||||||       ||||||||||| ||||||||||||||||||||||||    
T  21396589 atatca-tttcttccgttgcattgcatatattctcttactatcattttt 21396542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 426 - 805
Target Start/End: Original strand, 14190890 - 14191277
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||       
T  14190890 ataaagaacggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagtcgtaattt 14190989  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||    
T  14190990 taatatcattttc--ctgttgcattgcatatattctcttactatcatttttagtttatatgacaaagacataagtgaaaataggcatgtttcaagacata 14191087  T
Q  620 atgatatgnnnnnnnnaaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaa---agtt 715  Q
    || ||||          |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||   || |    
T  14191088 ataatatatatttttataggccataacatgttgtaattgtcattgatgagaattagaacaaatggcgtgtcattatgcaactttaaaaggaaataaagct 14191187  T
Q  716 gcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14191188 gcacttaaaatgcattaagaggtaacataaaacttcgaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 14191277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 37374253 - 37374163
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttattt-tttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37374253 ataaataatggcttgggaaatcctttacaaataagcttatttatttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 37374163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 27882403 - 27882313
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatt-ttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  27882403 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaaaaagc-tttttcgattaagaattgagt 27882313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 8427485 - 8427575
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  8427485 ataaataatgacttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaaaaattgagt 8427575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 2996600 - 2996700
Alignment:
Q  81 tctcatataatacacatcttatgattaggtaagaatgtcatcttaacatggaatatcgtaacaagtctaactccatcaagtacctttttaagtatgtgaa 180  Q
    ||||||| |||  ||||||||||||||| || ||| ||| | ||| | || ||||| ||| ||||||||||||||||||||| |||||||||||| ||||    
T  2996600 tctcatacaatcaacatcttatgattagttatgaaggtcctgttagcgtgaaatattgtatcaagtctaactccatcaagtatctttttaagtatatgaa 2996699  T
Q  181 c 181  Q
    |    
T  2996700 c 2996700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 426 - 805
Target Start/End: Complemental strand, 31921856 - 31921470
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||       
T  31921856 ataaataatgtcttgggaaatcctttagaaataagcttatttttttagtttgagttaagctgaaagaaacttttttcgattaagaattgagtcgtaactt 31921757  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||    
T  31921756 taatatcatttttt-ctgttgcattgcatatattctcttactatcatttttagtttttatgacaatgacagaagtgaaaataggcatatttcaagacata 31921658  T
Q  620 atgatatgnnnnnnnn-aaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagttgc 717  Q
    ||||||||         ||||||| ||||||||||||| ||||| ||||||||| |||| |||||  ||||||||||||||||||||||| ||||| |||    
T  31921657 atgatatgtttttttttaaggccataacatgttgtaattgtcatcgatgagaatcagaacaaatgatgtgtcattatgcaactttaaaaggaaaagctgc 31921558  T
Q  718 acttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  31921557 acttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgttttgttagtgttgtatccactgc 31921470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 426 - 707
Target Start/End: Original strand, 617670 - 617956
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttt-ttagtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta---- 520  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||        
T  617670 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaaacttttttcgattaagaattgagtcgtaactt 617769  T
Q  521 -aatatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
     |||||||       ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  617770 taatatca-ttttttccgttgcattgcatatattctcttactatcaattttagtttttatgacaaagacagaagtgaaaatagacatgtttcaagacata 617868  T
Q  620 atgatatgnnnnnnnnaaggccagaacatgttgtaa-tgtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaag 707  Q
    ||||  |         |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  617869 atgaatttttttttttaaggccagaacatgttgtaattgtcattgat-agaattagaacaaatggcgtgtcattatgcaactttgaaag 617956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 13345255 - 13345165
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatt-ttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13345255 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 13345165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 35857226 - 35857136
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatt-ttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35857226 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaagaattgagt 35857136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 49785752 - 49785842
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49785752 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaagaattgagt 49785842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 49711490 - 49711342
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta---- 520  Q
    ||||||||| ||||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |||        
T  49711490 ataaataatagcttgggaaatccttaacagacaagcttatttttttagtttgagttaagctgaaagaagct-ttttcgattaagaattgagccgtaactt 49711392  T
Q  521 -aatatcannnnnnnccgttgcattgtatatattctcttactatcattttt 570  Q
     |||||||       ||||||||||| ||||||||||||||||||||||||    
T  49711391 taatatca-tttcttccgttgcattgcatatattctcttactatcattttt 49711342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 625
Target Start/End: Complemental strand, 5337595 - 5337534
Alignment:
Q  564 catttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcataatgata 625  Q
    |||||| |||||||| || ||||||||||| ||||||| |||||||| ||  ||||||||||    
T  5337595 cattttgagtttttaggagaaagacagaagagaaaataagcatgtttcaacacataatgata 5337534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 570
Target Start/End: Complemental strand, 13345139 - 13345106
Alignment:
Q  537 gttgcattgtatatattctcttactatcattttt 570  Q
    ||||||||| ||||||||||||||||||||||||    
T  13345139 gttgcattgcatatattctcttactatcattttt 13345106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 210; Significance: 1e-114; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 426 - 805
Target Start/End: Original strand, 15126 - 15512
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||       
T  15126 ataaataatgtcttgggaaatcctttagaaataagcttatttttttagtttgagttaagctgaaagaaacttttttcgattaagaattgagtcgtaactt 15225  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| ||| ||||    
T  15226 taatatcatttttt-ccgttgcattgcatatattctcttactatcatttttagtttttatgacaataacagaagtgaaaataggcatatttcaagacata 15324  T
Q  620 atgatatgnnnnnnnn-aaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagttgc 717  Q
    ||||||||         ||||||| ||||||||||||| ||||| ||||| |||||||| |||||  ||||||||||||||||||||||| ||||| |||    
T  15325 atgatatgtttttttttaaggccataacatgttgtaattgtcatcgatgataattagaacaaatgatgtgtcattatgcaactttaaaaggaaaagctgc 15424  T
Q  718 acttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  15425 acttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctacactgagatatgttttgttagtgttgtatccactgc 15512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 426 - 805
Target Start/End: Original strand, 33861212 - 33861602
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||       
T  33861212 ataaataatgtcttgggaaatcctttagaaataagcttatttttttagtttgagttaagctgaaagaaacttttttcgattaagaattgagtcgtaactt 33861311  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||    
T  33861312 taatatcatttttt-ctgttgcattgcatatattctcttactatcatttttagtttttatgacaatgacagaagtgaaaataggcatatttcaagacata 33861410  T
Q  620 atgatatgnnnnnnnn-----aaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaag 713  Q
    ||||||||             ||||||| ||||||||||||| ||||| ||||||||| |||| |||||  ||||||||||||||||||||||| |||||    
T  33861411 atgatatgtttttttttttttaaggccataacatgttgtaattgtcatcgatgagaatcagaacaaatgatgtgtcattatgcaactttaaaaggaaaag 33861510  T
Q  714 ttgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  33861511 ctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgttttgttagtgttgtatccactgc 33861602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 7823150 - 7823060
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatt-ttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7823150 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 7823060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 25217465 - 25217555
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25217465 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaagaattgagt 25217555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 30326785 - 30326695
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatt-ttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30326785 ataaataatggcttgggaagtcctttacaaataagcttatttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 30326695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 25207946 - 25208037
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagc--ttattttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25207946 ataaataatggcttgggaaatcctttacaaataagctttttttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 25208037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 678 - 768
Target Start/End: Original strand, 5198726 - 5198816
Alignment:
Q  678 aaatggcgtgtcattatgcaactttaaaagaaaaagttgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 768  Q
    ||||||| ||||||||||||||  |||||| || |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  5198726 aaatggcatgtcattatgcaacaataaaaggaagagttgcacttaaaatgcatttagaggtaaaatcaaacttcaaagtaaaaacatgtct 5198816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 678 - 768
Target Start/End: Complemental strand, 5195360 - 5195270
Alignment:
Q  678 aaatggcgtgtcattatgcaactttaaaagaaaaagttgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 768  Q
    ||||||| ||||||||||||||  |||||| || || ||||||||||||| |||||||||||| || ||||||||| ||||||||||||||    
T  5195360 aaatggcatgtcattatgcaacaataaaaggaagagctgcacttaaaatgtattaagaggtaaaatcaaacttcaacgtaaaaacatgtct 5195270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 773 - 805
Target Start/End: Complemental strand, 5187294 - 5187262
Alignment:
Q  773 tgagatatgctttgttagtgttgtctccactgc 805  Q
    |||||||||||||||||||||||||||||||||    
T  5187294 tgagatatgctttgttagtgttgtctccactgc 5187262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 768
Target Start/End: Original strand, 1795686 - 1795724
Alignment:
Q  730 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 768  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  1795686 ttaagaggtaacatcaaacttcaaagaaaaaacatgtct 1795724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 768
Target Start/End: Complemental strand, 6231830 - 6231792
Alignment:
Q  730 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 768  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  6231830 ttaagaggtaatatcaaacttcaaagtaaaaacatgtct 6231792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 426 - 805
Target Start/End: Original strand, 41763194 - 41763584
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa--- 521  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||       
T  41763194 ataaataatgtcttgggaaatcctttagaaataagcttatttttttagtttgagttaagctgaaagaaacttttttcgattaagaattgagtcgtaactt 41763293  T
Q  522 --atatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcata 619  Q
      ||||||       | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||    
T  41763294 taatatcatttttt-ctgttgcattgcatatattctcttactatcatttttagtttttatgacaatgacagaagtgaaaataggcatatttcaagacata 41763392  T
Q  620 atgatatgnnnnnnnn-----aaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaag 713  Q
    ||||||||             ||||||| ||||||||||||| ||||| ||||||||| |||| |||||  ||||||||||||||||||||||| |||||    
T  41763393 atgatatgtttttttttttttaaggccataacatgttgtaattgtcatcgatgagaatcagaacaaatgatgtgtcattatgcaactttaaaaggaaaag 41763492  T
Q  714 ttgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  41763493 ctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgttttgttagtgttgtatccactgc 41763584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 34092 - 34002
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatt-ttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34092 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 34002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 52919346 - 52919256
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatt-ttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52919346 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 52919256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 10967722 - 10967772
Alignment:
Q  465 ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10967722 ttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 10967772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 570
Target Start/End: Original strand, 10967797 - 10967830
Alignment:
Q  537 gttgcattgtatatattctcttactatcattttt 570  Q
    ||||||||| ||||||||||||||||||||||||    
T  10967797 gttgcattgcatatattctcttactatcattttt 10967830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 8e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 426 - 805
Target Start/End: Complemental strand, 2331307 - 2330922
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt--agtttgagt--taagctgaaagaagcttttttcgattaagaattgagttgtaa 521  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||  |||   |||| |||||||||| ||||||||||||||| ||||    
T  2331307 ataaataatggcttgggaaatcctttacaaataagtttattttttttagtttgagtcgtaactagaaa-aagctttttttgattaagaattgagtcgtaa 2331209  T
Q  522 at-----atcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggc 616  Q
     |     ||||       || |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||| |    
T  2331208 ctttaaaatcatttttt-ccattgcatttcatatattctcttactatcatttttagtttttatgacaaagacaaaagtgaaaatatacatgttttaagac 2331110  T
Q  617 ataatgatatgnnnnnnnnaaggccagaacatgttgtaat-gtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaagaaaaagtt 715  Q
    ||||||||||         ||||||| ||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||| ||||| |    
T  2331109 ataatgatat--tttttttaaggccaaaacatgttgtaattgtcattgatgagaattagaacaaatgatgtgtcattatgcaactttaaaaggaaaagct 2331012  T
Q  716 gcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtctccactgagatatgctttgttagtgttgtctccactgc 805  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  |||||| |||||||||||||||||||||||    
T  2331011 gcacttaaaatgcattaagaggtaacgtaaaacttcaaagtaaaaacatgtttccactctgatatgttttgttagtgttgtctccactgc 2330922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 426 - 707
Target Start/End: Complemental strand, 48234149 - 48233865
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagcttatttttt--agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta--- 520  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||| |||       
T  48234149 ataaataatggcttgggaaatcctttacaaataaggttattttttttagtttgagttaagctgaaagaagctttttttgattaagaattgagtcgtaact 48234050  T
Q  521 --aatatcannnnnnnccgttgcattgtatatattctcttactatcatttttagtttttatgacaaagacagaagtgaaaataggcatgtttgaaggcat 618  Q
      |||||||       || |||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||| |||    
T  48234049 ttaatatca-ttttttccattgcattgcatatattttcttactatcaattttagtttttatgacaaagacaaaagtgaaaatagacatgtttcaagacat 48233951  T
Q  619 aatgatatgnnnnnnnnaaggccagaacatgttgtaa-tgtcattgatgagaattagaataaatggcgtgtcattatgcaactttaaaag 707  Q
    |||||| |         ||||||| |||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| ||||    
T  48233950 aatgattt---ttttttaaggccataacatgttgtaattgtcattgat-agaattagaacaaatggtgtgtcattatgcaactttgaaag 48233865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 6309894 - 6309984
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  6309894 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaggaagc-tttttcgattaagaattgagt 6309984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 47860 - 47950
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47860 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaagaattgagt 47950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 12780048 - 12780138
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12780048 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagctttttt-gattaagaattgagt 12780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 426 - 516
Target Start/End: Original strand, 12784902 - 12784992
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12784902 ataaataatggcttgggaaatcctttacaaataagcttatttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgagt 12784992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 7038039 - 7037949
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7038039 ataaataatggcttgggaaatcctttacaaataaacttatttttttagtttgagttaagctgaaataagc-tttttcgattaagaattgagt 7037949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 9000044 - 9000133
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgag 515  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9000044 ataaataatggcttgggaaatccttaacaaacaagcttatttttttagtttgagttaagctgaaagaagc-tttttcgattaagaattgag 9000133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 428 - 568
Target Start/End: Original strand, 45122207 - 45122351
Alignment:
Q  428 aaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgtaa----- 521  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||  ||||         
T  45122207 aaataatggcttgggaaatccttaacaaacaagcttatttttttagtttgagttaagctgaaagaagcttttt-caattaagaattgagccgtaacttta 45122305  T
Q  522 atatcannnnnnnccgttgcattgtatatattctcttactatcattt 568  Q
    ||||||       ||||||||||| ||||||||||||||||||||||    
T  45122306 atatcatttttt-ccgttgcattgcatatattctcttactatcattt 45122351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 570
Target Start/End: Original strand, 9000157 - 9000192
Alignment:
Q  535 ccgttgcattgtatatattctcttactatcattttt 570  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9000157 ccgttgcattgcatatattctcttactatcattttt 9000192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 768
Target Start/End: Complemental strand, 5179012 - 5178974
Alignment:
Q  730 ttaagaggtaacataaaacttcaaagtaaaaacatgtct 768  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  5179012 ttaagaggtaacatcaaacttcgaagtaaaaacatgtct 5178974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 1070 - 980
Alignment:
Q  426 ataaataatggcttgggaaatcctttacaaataagctta-ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagt 516  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  1070 ataaataatggcttgggaaatcctttacaaataaacttatttttttagtttgagttaagctgaaataagc-tttttcgattaagaattgagt 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 33253 - 33104
Alignment:
Q  426 ataaataatggcttgggaaatccttta-caaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta--- 520  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||  |||       
T  33253 ataaataatggtttgggaaatcctttaacaaacaagcttatttttttagttttagttaagcggaaagaagct-ttttcgattaagaattgagccgtaact 33155  T
Q  521 --aatatcannnnnnnccgttgcattgtatatattctcttactatcattttt 570  Q
      |||||||       ||||||||||| ||||||||||||||||||||||||    
T  33154 ttaatatca-ttttttccgttgcattgcatatattctcttactatcattttt 33104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 428 - 515
Target Start/End: Complemental strand, 10510 - 10423
Alignment:
Q  428 aaataatggcttgggaaatcctttacaaataagcttatttttt-agtttgagttaagctgaaagaagcttttttcgattaagaattgag 515  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||    
T  10510 aaataatggcttgggaaatccttaacaaacaagcttatttttttagtttgagttaagctgaaagaagct-ttttcaattaagaattgag 10423  T

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Target: scaffold0499; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 568
Target Start/End: Complemental strand, 10399 - 10366
Alignment:
Q  535 ccgttgcattgtatatattctcttactatcattt 568  Q
    ||||||||||| ||||||||||||||||||||||    
T  10399 ccgttgcattgcatatattctcttactatcattt 10366  T

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Target: scaffold0107 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 465 - 570
Target Start/End: Complemental strand, 43255 - 43147
Alignment:
Q  465 ttttttagtttgagttaagctgaaagaagcttttttcgattaagaattgagttgta-----aatatcannnnnnnccgttgcattgtatatattctctta 559  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||     |||||||       ||||||||||| |||||||||||||    
T  43255 ttttttagtttgagttaagctgaaagaagct-ttttcgattaagaattgagccgtaactttaatatca-ttttttccgttgcattgcatatattctctta 43158  T
Q  560 ctatcattttt 570  Q
    |||||||||||    
T  43157 ctatcattttt 43147  T

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