View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_high_77 (Length: 349)

Name: NF11930_high_77
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_high_77
NF11930_high_77
[»] chr3 (5 HSPs)
chr3 (15-331)||(21375126-21375441)
chr3 (189-267)||(1933998-1934075)
chr3 (243-288)||(29248410-29248455)
chr3 (174-203)||(34817354-34817383)
chr3 (252-288)||(37133465-37133501)
[»] scaffold0126 (1 HSPs)
scaffold0126 (152-245)||(18587-18679)
[»] chr4 (3 HSPs)
chr4 (179-267)||(12095339-12095427)
chr4 (145-262)||(12096642-12096760)
chr4 (243-288)||(45683208-45683253)
[»] chr5 (3 HSPs)
chr5 (174-267)||(9378674-9378767)
chr5 (164-288)||(10656344-10656467)
chr5 (152-212)||(33957381-33957441)
[»] chr2 (2 HSPs)
chr2 (176-288)||(29078017-29078129)
chr2 (154-210)||(29076553-29076609)
[»] chr7 (2 HSPs)
chr7 (234-288)||(38030410-38030464)
chr7 (243-288)||(2357305-2357350)
[»] chr8 (1 HSPs)
chr8 (164-212)||(12873070-12873118)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 21375441 - 21375126
Alignment:
Q  15 atgaacataataattgacagattaattagatagaagttcatgacaagaacaagaacnnnnnnncttaaaacgatagtatgagaacaaaattatattaacc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  21375441 atgaacataataattgacagattaattagatagaagttcatgacaagaacaagaacaaaaaaacttaaaacgatagtatgagaacaaaattatattaacc 21375342  T
Q  115 aaatagataatttttgggacaaaatagtataaaatacgttaaattgttcttttaatctcttaactatttatttggtatcattttggtcctataattaact 214  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21375341 aaatagataatttttgggaccaaatagtataaaatacgctaaattgttcttttaatctcttaactatttatttggtatcattttggtcctataattaact 21375242  T
Q  215 tttggtccatttgagtctcttaagttcatctctgttgcacattttagtcccttttattagttttaattcaaaaaaccgttaactcaatacaaaggtgaca 314  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  21375241 tttggtccatttgagtctcttaagttcatct-tgttgcacattttagtccattttattagttttaattcaaaaaa-tgttaacttaatacaaaggtgaca 21375144  T
Q  315 agtaaggga-gatttgac 331  Q
    ||||||||| ||||||||    
T  21375143 agtaagggatgatttgac 21375126  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 1934075 - 1933998
Alignment:
Q  189 gtatcattttggtcctataattaacttttggtccatttgagtctcttaagttcatctctgttgcacattttagtccctt 267  Q
    |||||| |||||| |||||||||| ||||||| |||||||||| ||||||||||||||| || ||||||||||||||||    
T  1934075 gtatcactttggtgctataattaa-ttttggttcatttgagtcccttaagttcatctctattacacattttagtccctt 1933998  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 29248410 - 29248455
Alignment:
Q  243 tctctgttgcacattttagtcccttttattagttttaattcaaaaa 288  Q
    |||||||| |||||||| |||| ||| |||||||||||||||||||    
T  29248410 tctctgttacacattttggtccttttcattagttttaattcaaaaa 29248455  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 34817354 - 34817383
Alignment:
Q  174 ttaactatttatttggtatcattttggtcc 203  Q
    ||||||||||||||||||||||||||||||    
T  34817354 ttaactatttatttggtatcattttggtcc 34817383  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 37133501 - 37133465
Alignment:
Q  252 cacattttagtcccttttattagttttaattcaaaaa 288  Q
    |||||||| |||| |||||||||||||||||||||||    
T  37133501 cacattttggtcctttttattagttttaattcaaaaa 37133465  T

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Target: scaffold0126 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 18679 - 18587
Alignment:
Q  152 gttaaattgttcttttaatctcttaactatttatttggtatcattttggtcctataattaacttttggtccatttgagtctcttaagttcatct 245  Q
    |||||||||||| ||| |||| |||||||||||| |||||||| |||||| | |||||| | |||||||||||||||||| ||||| |||||||    
T  18679 gttaaattgttcgtttgatcttttaactatttatctggtatcactttggtaccataatt-atttttggtccatttgagtcccttaatttcatct 18587  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 12095339 - 12095427
Alignment:
Q  179 tatttatttggtatcattttggtcctataattaacttttggtccatttgagtctcttaagttcatctctgttgcacattttagtccctt 267  Q
    ||||| ||| |||||  |||||||| |||||||| ||||||||| ||| ||||  ||||||||||||||||| |||||| |||||||||    
T  12095339 tattttttttgtatcgctttggtcccataattaaattttggtccgtttaagtcctttaagttcatctctgtttcacattatagtccctt 12095427  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 12096760 - 12096642
Alignment:
Q  145 aaaatacgttaaattgttcttttaatctcttaactatttattt-ggtatcattttggtcctataattaacttttggtccatttgagtctcttaagttcat 243  Q
    |||||| | ||||||||||||||  || ||| || |||| ||| |||||| ||||||||| |||||| | ||||| ||   || |||| |||||||||||    
T  12096760 aaaataggctaaattgttcttttggtcccttgaccatttcttttggtatcgttttggtcccataattcatttttgatctccttaagtcccttaagttcat 12096661  T
Q  244 ctctgttgcacattttagt 262  Q
    ||||||| |||||||||||    
T  12096660 ctctgttacacattttagt 12096642  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 45683208 - 45683253
Alignment:
Q  243 tctctgttgcacattttagtcccttttattagttttaattcaaaaa 288  Q
    |||||||| |||||||| |||| |||| ||||||||||||||||||    
T  45683208 tctctgttacacattttggtcctttttgttagttttaattcaaaaa 45683253  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 9378767 - 9378674
Alignment:
Q  174 ttaactatttatttggtatcattttggtcctataattaacttttggtccatttgagtctcttaagttcatctctgttgcacattttagtccctt 267  Q
    |||||||||| |||||||||| |||||||  |||||||| ||||||||| ||| ||||  ||||||||||||| ||| || ||||  |||||||    
T  9378767 ttaactatttttttggtatcactttggtcgcataattaatttttggtccgtttaagtcctttaagttcatctccgttacatatttctgtccctt 9378674  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 10656467 - 10656344
Alignment:
Q  164 ttttaatctcttaactatttatttggtatcattttggtcctataattaacttttggtccatttgagtctcttaagttcatctctgttgcacattttagtc 263  Q
    |||| ||| ||||||||||||  | |||||  ||||||||| ||| |||  |||| |  |||| |||| ||||| ||| |||||||| |||||||| |||    
T  10656467 ttttgatcccttaactatttaggtagtatcgctttggtcctttaagtaaaatttgatttattttagtcccttaacttc-tctctgttacacattttggtc 10656369  T
Q  264 ccttttattagttttaattcaaaaa 288  Q
    | |||| ||||||||||||||||||    
T  10656368 ctttttgttagttttaattcaaaaa 10656344  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 33957441 - 33957381
Alignment:
Q  152 gttaaattgttcttttaatctcttaactatttatttggtatcattttggtcctataattaa 212  Q
    ||||||||||| ||||  |||||||||| |||| || |||||| |||||||| ||||||||    
T  33957441 gttaaattgttattttcgtctcttaactttttaattagtatcactttggtcccataattaa 33957381  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 29078129 - 29078017
Alignment:
Q  176 aactatttatttggtatcattttggtcctataattaacttttggtccatttgagtctcttaagttcatctctgttgcacattttagtcccttttattagt 275  Q
    ||||||||| ||  |||| ||||||||| ||||||||  |||| ||| |||  || | ||||||| ||||||||| |||||||| |||  ||| ||||||    
T  29078129 aactatttaattaatatcgttttggtccaataattaaaatttgttccgttttggtattttaagtttatctctgttacacattttggtcattttcattagt 29078030  T
Q  276 tttaattcaaaaa 288  Q
    |||||||||||||    
T  29078029 tttaattcaaaaa 29078017  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 29076553 - 29076609
Alignment:
Q  154 taaattgttcttttaatctcttaactatttatttggtatcattttggtcctataatt 210  Q
    ||||||| | |||| |||||||||||||||| || ||||||||||||||| ||||||    
T  29076553 taaattgctattttgatctcttaactatttaattagtatcattttggtcccataatt 29076609  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 38030410 - 38030464
Alignment:
Q  234 ttaagttcatctctgttgcacattttagtcccttttattagttttaattcaaaaa 288  Q
    |||| ||||||| |||| |||||||||| ||||||| |||| |||||||||||||    
T  38030410 ttaatttcatctatgttacacattttagccccttttgttagatttaattcaaaaa 38030464  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 2357350 - 2357305
Alignment:
Q  243 tctctgttgcacattttagtcccttttattagttttaattcaaaaa 288  Q
    |||||||| |||||||| |||| |||| ||||||||||||||||||    
T  2357350 tctctgttacacattttggtcctttttgttagttttaattcaaaaa 2357305  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 12873070 - 12873118
Alignment:
Q  164 ttttaatctcttaactatttatttggtatcattttggtcctataattaa 212  Q
    |||||||| |||||||||||| || |||||| ||||||||| |||||||    
T  12873070 ttttaatcccttaactatttaattagtatcactttggtcctttaattaa 12873118  T

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