View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_high_85 (Length: 316)
Name: NF11930_high_85
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_high_85 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 8752083 - 8752329
Alignment:
| Q |
15 |
atgaaagaaatatacaatttaatttaagtgacaacaaatacacttataataaatatttaaagagtttggatatcggtaataataaatgttttatttatat |
114 |
Q |
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| T |
8752083 |
atgaaagaaatatacaatttaatttaagtgacaacaaatacacttataataaatatttacagaatttggatat---------------ttttatttatat |
8752167 |
T |
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| Q |
115 |
tttcaaacagtgcattatacattgaattgaacttaagtatctaatatttctatgattgtacgaaacattacaattttttaaaattacagaaactttacaa |
214 |
Q |
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| T |
8752168 |
tttcaaacagtgcattatgcattgaattgaacttaagtatctaatatttctatgattgtatgaaacattacaatttttaaaaattacagaaactttacaa |
8752267 |
T |
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| Q |
215 |
attttatcaactattaagaattattagtttgatggtttcattgatgaaaattaatgtataca |
276 |
Q |
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| T |
8752268 |
attttatcaactattaagaattattagtttgatggtttcattgatgaaaattaatgtataca |
8752329 |
T |
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