View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_high_88 (Length: 305)

Name: NF11930_high_88
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_high_88
NF11930_high_88
[»] chr4 (7 HSPs)
chr4 (49-151)||(40459930-40460029)
chr4 (241-292)||(70126-70177)
chr4 (235-292)||(49499882-49499940)
chr4 (233-292)||(55163018-55163077)
chr4 (238-292)||(28968564-28968618)
chr4 (233-292)||(40459777-40459837)
chr4 (49-89)||(70301-70341)
[»] chr3 (11 HSPs)
chr3 (49-151)||(16976298-16976398)
chr3 (44-151)||(7335814-7335917)
chr3 (233-292)||(9104924-9104983)
chr3 (45-151)||(46403721-46403824)
chr3 (233-292)||(46403920-46403980)
chr3 (49-151)||(5003856-5003956)
chr3 (241-292)||(16976144-16976195)
chr3 (233-290)||(5004049-5004107)
chr3 (233-292)||(7336012-7336072)
chr3 (48-145)||(17537617-17537716)
chr3 (233-292)||(43277363-43277422)
[»] chr1 (14 HSPs)
chr1 (49-151)||(339087-339186)
chr1 (49-151)||(43406494-43406593)
chr1 (233-292)||(18472263-18472322)
chr1 (48-151)||(37666315-37666414)
chr1 (49-145)||(51442505-51442602)
chr1 (233-292)||(43406687-43406747)
chr1 (241-292)||(35761359-35761410)
chr1 (233-292)||(338934-338994)
chr1 (256-292)||(8422383-8422419)
chr1 (113-145)||(35761213-35761245)
chr1 (233-292)||(37666500-37666559)
chr1 (51-102)||(19197952-19198003)
chr1 (57-101)||(33006743-33006787)
chr1 (51-103)||(35761147-35761199)
[»] chr2 (11 HSPs)
chr2 (47-151)||(40448460-40448561)
chr2 (233-292)||(40728751-40728810)
chr2 (49-151)||(32735251-32735350)
chr2 (236-292)||(35670091-35670147)
chr2 (233-292)||(40448307-40448367)
chr2 (233-292)||(18292064-18292123)
chr2 (236-292)||(41339577-41339634)
chr2 (113-148)||(44789489-44789524)
chr2 (238-292)||(34397181-34397235)
chr2 (238-287)||(44789336-44789385)
chr2 (114-142)||(34397044-34397072)
[»] chr6 (11 HSPs)
chr6 (49-150)||(32449393-32449491)
chr6 (233-292)||(13772730-13772789)
chr6 (48-151)||(34637167-34637267)
chr6 (49-151)||(23259757-23259856)
chr6 (238-292)||(26182019-26182073)
chr6 (233-292)||(10750949-10751009)
chr6 (49-103)||(19814741-19814795)
chr6 (242-292)||(23259961-23260011)
chr6 (233-292)||(32449586-32449646)
chr6 (241-292)||(34637013-34637064)
chr6 (13-45)||(10815653-10815685)
[»] chr8 (10 HSPs)
chr8 (233-292)||(44436928-44436987)
chr8 (236-292)||(6150346-6150402)
chr8 (234-292)||(40840846-40840905)
chr8 (234-292)||(41957781-41957839)
chr8 (233-291)||(22815653-22815712)
chr8 (49-93)||(6161770-6161814)
chr8 (49-142)||(22640563-22640656)
chr8 (49-102)||(41957597-41957650)
chr8 (49-89)||(26162591-26162631)
chr8 (49-101)||(40840649-40840701)
[»] chr7 (17 HSPs)
chr7 (233-292)||(12196075-12196134)
chr7 (233-292)||(22078454-22078513)
chr7 (41-151)||(15873095-15873202)
chr7 (234-292)||(40106638-40106696)
chr7 (233-285)||(12911052-12911104)
chr7 (233-292)||(48653148-48653208)
chr7 (49-151)||(10287917-10288016)
chr7 (233-292)||(10288111-10288171)
chr7 (244-292)||(11035715-11035763)
chr7 (235-292)||(49169662-49169719)
chr7 (238-292)||(13163599-13163653)
chr7 (233-292)||(15873296-15873356)
chr7 (51-103)||(12195886-12195938)
chr7 (113-148)||(13163460-13163495)
chr7 (46-89)||(49169487-49169530)
chr7 (49-87)||(48652966-48653004)
chr7 (48-101)||(12910866-12910919)
[»] chr5 (12 HSPs)
chr5 (48-151)||(537800-537900)
chr5 (233-292)||(38001805-38001864)
chr5 (233-291)||(4557383-4557441)
chr5 (234-292)||(42862200-42862258)
chr5 (243-292)||(6309522-6309571)
chr5 (233-292)||(30910585-30910644)
chr5 (242-292)||(40691702-40691752)
chr5 (233-292)||(537646-537706)
chr5 (49-101)||(40691880-40691932)
chr5 (234-282)||(42640266-42640314)
chr5 (61-145)||(4557232-4557315)
chr5 (233-267)||(38279263-38279297)
[»] scaffold0657 (3 HSPs)
scaffold0657 (49-151)||(8576-8675)
scaffold0657 (49-103)||(1464-1518)
scaffold0657 (233-292)||(1658-1718)
[»] scaffold1838 (1 HSPs)
scaffold1838 (233-292)||(1013-1072)
[»] scaffold0413 (2 HSPs)
scaffold0413 (233-292)||(258-318)
scaffold0413 (47-151)||(412-513)
[»] scaffold0041 (1 HSPs)
scaffold0041 (234-288)||(32669-32723)
[»] scaffold0013 (1 HSPs)
scaffold0013 (113-142)||(240858-240887)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 40460029 - 40459930
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  40460029 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatcaataatatattct 40459933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 70177 - 70126
Alignment:
Q  241 gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  70177 gtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 70126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 49499940 - 49499882
Alignment:
Q  235 caatttgtcccccgtactcacttcaagc-aaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  49499940 caatttgtcccccgtacgcacttcaagcgaaaaacttcaaagcatagaccatctcttct 49499882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 55163077 - 55163018
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  55163077 cccaatttgttcgccgtacacacttcaagtaaaaacttcaaagcatagaccatctcttct 55163018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 28968564 - 28968618
Alignment:
Q  238 tttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  28968564 tttgtcccccgtatgcacttcaagcaaaaacttcaaagcatagaccatcttttct 28968618  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 40459837 - 40459777
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  40459837 cccaatttcgtcccctgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttct 40459777  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 70341 - 70301
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaat 89  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  70341 tgtaacgccccggattttggtccaagacattacgcctaaat 70301  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 16976398 - 16976298
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||         |||| |||||||||||||||||||||||||||||||    
T  16976398 tgtaacgccccggattttggtccaagacattactcctaaatcattttccttttct--aaaaaaacactgctatttatttatttcatcaataatatattct 16976301  T
Q  149 agc 151  Q
    |||    
T  16976300 agc 16976298  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 7335814 - 7335917
Alignment:
Q  44 attattgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatat 143  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||| ||| |||    
T  7335814 attattgtaacgccc-ggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatctatattat 7335909  T
Q  144 attctagc 151  Q
    ||||||||    
T  7335910 attctagc 7335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 9104983 - 9104924
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  9104983 cccaatttgtcccccgtacgcacttcaagcagaaacttcaaagcatagacaatctcttct 9104924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 46403721 - 46403824
Alignment:
Q  45 ttattgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatata 144  Q
    ||||||||||||||  ||||||| ||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||| ||| ||||    
T  46403721 ttattgtaacgccccagattttgatccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatctatattata 46403817  T
Q  145 ttctagc 151  Q
    |||||||    
T  46403818 ttctagc 46403824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 46403920 - 46403980
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  46403920 cccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttct 46403980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 5003856 - 5003956
Alignment:
Q  49 tgtaacgccctggattttggtccaagaca-ttactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattc 147  Q
    |||||||||| |||||||||||||||||| |||| ||||||| |||||||||||||         ||||||||||||||||||||||| ||| |||||||    
T  5003856 tgtaacgccccggattttggtccaagacatttacgcctaaatcattttccttttct---aaaaaacactactatttatttatttcatctatattatattc 5003952  T
Q  148 tagc 151  Q
    ||||    
T  5003953 tagc 5003956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 16976195 - 16976144
Alignment:
Q  241 gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  16976195 gtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttct 16976144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 5004049 - 5004107
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctctt 290  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  5004049 cccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctctt 5004107  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 7336012 - 7336072
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  7336012 cccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttct 7336072  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 17537617 - 17537716
Alignment:
Q  48 ttgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnn--cactactatttatttatttcatcaataatatat 145  Q
    ||||||||||| |||||||| ||||||||||||| ||||||| |||||  ||||||           |||||||||||||||||||||||||||||||||    
T  17537617 ttgtaacgccccggattttgttccaagacattacgcctaaatcattttttttttctgaaaaaaaaaacactactatttatttatttcatcaataatatat 17537716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 43277363 - 43277422
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||| |||| |||||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  43277363 cccaacttgttccccgtacgcacttcaagcaaaaacaccaaagtatagaccatctcttct 43277422  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 339186 - 339087
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  339186 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatcaataatatattct 339090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 43406494 - 43406593
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  43406494 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatcaataatatattct 43406590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 18472263 - 18472322
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18472263 cccaatttgtcccccgtacacacttcaagcaaaaacttcaaagcatagaccatctcttct 18472322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 37666315 - 37666414
Alignment:
Q  48 ttgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattc 147  Q
    ||||||||||| |||||||| ||||||||||||| ||||||| ||||| |||||||         |||||||||||||||||||||| ||||||||||||    
T  37666315 ttgtaacgccccggattttgatccaagacattacgcctaaatcatttttcttttct----gaaaacactactatttatttatttcattaataatatattc 37666410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 51442505 - 51442602
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttct-nnnnnnnnncactactatttatttatttcatcaataatatat 145  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||| |||| |          |||||||||||||||||||||||||||||||||    
T  51442505 tgtaacgccccggattttgatccaagacattacgcctaaattattttctttttttgaaaaaaaaacactactatttatttatttcatcaataatatat 51442602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 43406687 - 43406747
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  43406687 cccaatttcgtcccctgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttct 43406747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 35761359 - 35761410
Alignment:
Q  241 gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  35761359 gtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatatcttct 35761410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 338994 - 338934
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||  ||||||||||||||||||||||| ||||| ||||||||||    
T  338994 cccaatttcgtcccccgtaagcacttcaagcaaaaacttcaaagtatagatcatctcttct 338934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 8422419 - 8422383
Alignment:
Q  256 ttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8422419 ttcaagtaaaaacttcaaagcatagaccatctcttct 8422383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 35761213 - 35761245
Alignment:
Q  113 cactactatttatttatttcatcaataatatat 145  Q
    |||||||||||||||||||||||||||||||||    
T  35761213 cactactatttatttatttcatcaataatatat 35761245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 37666500 - 37666559
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||| |||||||||| |||||| ||||||||||| ||||||||||    
T  37666500 cccaatttcgtcccccgtacgcacttcaagc-aaaactacaaagcatagatcatctcttct 37666559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 19197952 - 19198003
Alignment:
Q  51 taacgccctggattttggtccaagacattactcctaaattattttccttttc 102  Q
    ||||| || |||||||||||||||||||||| ||||||| |||||| |||||    
T  19197952 taacgtcccggattttggtccaagacattacacctaaatcattttctttttc 19198003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 33006743 - 33006787
Alignment:
Q  57 cctggattttggtccaagacattactcctaaattattttcctttt 101  Q
    ||||||||||||||||||||||||| | ||||| |||||| ||||    
T  33006743 cctggattttggtccaagacattacgcataaatcattttcatttt 33006787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 35761147 - 35761199
Alignment:
Q  51 taacgccctggattttggtccaagacattactcctaaattattttccttttct 103  Q
    |||||||| | |||||| ||||||||||||| |||||||||||| | ||||||    
T  35761147 taacgccccgaattttgatccaagacattacgcctaaattatttcctttttct 35761199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 40448561 - 40448460
Alignment:
Q  47 attgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatatt 146  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||||||||||| ||    
T  40448561 attgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatcaataatatgtt 40448465  T
Q  147 ctagc 151  Q
    |||||    
T  40448464 ctagc 40448460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 40728751 - 40728810
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  40728751 cccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcatagactatctcttct 40728810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 32735251 - 32735350
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| | |||||||||||||||||| | ||||||| |||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  32735251 tgtaacgccccgaattttggtccaagacatttcgcctaaatcattttccttttctgaaaaa---cactactatttatttatttcatcaataatatattct 32735347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 35670091 - 35670147
Alignment:
Q  236 aatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||    
T  35670091 aatttgtcccccgaacgcacttcaagcaaaaacttcaaagcatataccatctcttct 35670147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 40448367 - 40448307
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||  ||||||||||||||||||||||| ||||| ||||||||||    
T  40448367 cccaatttcgtcccccgtaagcacttcaagcaaaaacttcaaagtatagatcatctcttct 40448307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 18292064 - 18292123
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| |||||| ||  ||||||||||||||||||||||||||| | ||||||||||    
T  18292064 cccaatttatcccccatatgcacttcaagcaaaaacttcaaagcataaatcatctcttct 18292123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 41339577 - 41339634
Alignment:
Q  236 aatttgtcccccgtactcacttcaagc-aaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||||| ||| |||||||||| |||||||||||||||| |||||||| ||||    
T  41339577 aatttgtcccccatacgcacttcaagcaaaaaacttcaaagcatggaccatcttttct 41339634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 44789524 - 44789489
Alignment:
Q  113 cactactatttatttatttcatcaataatatattct 148  Q
    |||||||||||||||||||||||||||||| |||||    
T  44789524 cactactatttatttatttcatcaataataaattct 44789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 34397181 - 34397235
Alignment:
Q  238 tttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||| ||||||||  |||||||||||||||||||||||  ||| ||||||||||    
T  34397181 tttgttccccgtacgtacttcaagcaaaaacttcaaagctcagatcatctcttct 34397235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 44789385 - 44789336
Alignment:
Q  238 tttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatct 287  Q
    ||||||||  |||| ||||||| |||| ||||||||||||||||||||||    
T  44789385 tttgtcccatgtacgcacttcaggcaataacttcaaagcatagaccatct 44789336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 34397044 - 34397072
Alignment:
Q  114 actactatttatttatttcatcaataata 142  Q
    |||||||||||||||||||||||||||||    
T  34397044 actactatttatttatttcatcaataata 34397072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 32449393 - 32449491
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  32449393 tgtaacgccccggattttgatccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatcaataatatattct 32449489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 13772730 - 13772789
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  13772730 cccaatttgtcccccgtacgcacttctagcaaaaacttcaaagcatagaccatctcttct 13772789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 34637267 - 34637167
Alignment:
Q  48 ttgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattc 147  Q
    |||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||| ||| |||||||    
T  34637267 ttgtaacgccccagattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatctatattatattc 34637171  T
Q  148 tagc 151  Q
    ||||    
T  34637170 tagc 34637167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 23259757 - 23259856
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||| || |||||||||| ||||||| ||||| |||||||         ||||||||||||||||||||||||||||||||||||    
T  23259757 tgtaacgccccggattttgatctaagacattacgcctaaatcatttttcttttctgaaaaa---cactactatttatttatttcatcaataatatattct 23259853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 26182019 - 26182073
Alignment:
Q  238 tttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26182019 tttgttccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 26182073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 10750949 - 10751009
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  10750949 cccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttct 10751009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 19814741 - 19814795
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttct 103  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  19814741 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct 19814795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 23259961 - 23260011
Alignment:
Q  242 tcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23259961 tcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttct 23260011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 32449586 - 32449646
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||| |||||||||||| |||||||| ||||||| ||||||||||    
T  32449586 cccaatttcgtcccccgtacgcacttcaagcaagaacttcaatgcatagatcatctcttct 32449646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 34637064 - 34637013
Alignment:
Q  241 gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||  |||||| |||||||||||||||||||||| ||||||||||    
T  34637064 gtcccccgtatacacttccagcaaaaacttcaaagcatagatcatctcttct 34637013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 10815685 - 10815653
Alignment:
Q  13 catcaattactatatggtgcattacctaactat 45  Q
    ||||||||||| |||||||||||||||||||||    
T  10815685 catcaattactctatggtgcattacctaactat 10815653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 44436987 - 44436928
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  44436987 cccaatttgtcccccatacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 44436928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 6150402 - 6150346
Alignment:
Q  236 aatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  6150402 aatttgtcctccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 6150346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 40840846 - 40840905
Alignment:
Q  234 ccaatttgtccccc-gtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  40840846 ccaatttgtccccccgtacgcacttcaagcaaaaactttaaagcatagaccatctcttct 40840905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 41957781 - 41957839
Alignment:
Q  234 ccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  41957781 ccaatttatcccccatacgcactacaagcaaaaacttcaaagcatagaccatctcttct 41957839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 22815653 - 22815712
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttc 291  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  22815653 cccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaatcatagactatctcttc 22815712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 6161814 - 6161770
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattatt 93  Q
    |||||||||| | |||||||||||||||||||| |||||||||||    
T  6161814 tgtaacgccccgaattttggtccaagacattacgcctaaattatt 6161770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 22640563 - 22640656
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataata 142  Q
    |||||||||| | |||||| | ||||||||||| |||||||||||||| |||| |         ||| ||||||||||||||| ||||||||||    
T  22640563 tgtaacgccccgaattttgatacaagacattacgcctaaattattttctttttttgaaaaaaaacacgactatttatttatttaatcaataata 22640656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 41957597 - 41957650
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttc 102  Q
    ||||||||| ||||||||| | ||||||||||||||||| | |||||| |||||    
T  41957597 tgtaacgccttggattttgattcaagacattactcctaattcattttcattttc 41957650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 26162631 - 26162591
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaat 89  Q
    ||||||||||||||||||| | ||||||||||| |||||||    
T  26162631 tgtaacgccctggattttgattcaagacattacgcctaaat 26162591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 40840649 - 40840701
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttcctttt 101  Q
    |||||||||| |||||||||||||| ||||||| ||||| | |||||| ||||    
T  40840649 tgtaacgccccggattttggtccaaaacattacacctaattcattttcatttt 40840701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 12196075 - 12196134
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  12196075 cccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagtatagaccatctcttct 12196134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 22078513 - 22078454
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22078513 cccaatatgtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 22078454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 15873095 - 15873202
Alignment:
Q  41 actattattgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataa 140  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         |||||||||||||||| |||||| |||     
T  15873095 actaatattgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttacttcatctatat 15873191  T
Q  141 tatattctagc 151  Q
    |||||||||||    
T  15873192 tatattctagc 15873202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 40106696 - 40106638
Alignment:
Q  234 ccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  40106696 ccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatctcttct 40106638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 12911052 - 12911104
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccat 285  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12911052 cccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccat 12911104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 48653148 - 48653208
Alignment:
Q  233 cccaatttgtcccccg-tactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  48653148 cccaatttgtcccccggtacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 48653208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 10287917 - 10288016
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||| ||| |||||| |    
T  10287917 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatctatattatattat 10288013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 10288111 - 10288171
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  10288111 cccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttct 10288171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 11035715 - 11035763
Alignment:
Q  244 ccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11035715 ccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 11035763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 49169662 - 49169719
Alignment:
Q  235 caatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||    
T  49169662 caatttgtcccacgtacgcacttcaagcaaaaacttcaaatcatagaacatctcttct 49169719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 13163599 - 13163653
Alignment:
Q  238 tttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||    
T  13163599 tttgtccctcgtacgcacttcaaacaaaaacttcaaagcatagaccatctattct 13163653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 15873296 - 15873356
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||||||| ||||||||||    
T  15873296 cccaatttcgtcccccgtatacacttccagcaaaaacttcaaagcatagatcatctcttct 15873356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 12195886 - 12195938
Alignment:
Q  51 taacgccctggattttggtccaagacattactcctaaattattttccttttct 103  Q
    ||||||||  ||||||| ||||||||||||| |||||||||||||| ||||||    
T  12195886 taacgccccagattttgatccaagacattacgcctaaattattttctttttct 12195938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 13163460 - 13163495
Alignment:
Q  113 cactactatttatttatttcatcaataatatattct 148  Q
    |||||||||||||||||||||||||||||| |||||    
T  13163460 cactactatttatttatttcatcaataataaattct 13163495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 49169487 - 49169530
Alignment:
Q  46 tattgtaacgccctggattttggtccaagacattactcctaaat 89  Q
    ||||||||||||  |||||||||||||||||||||| |||||||    
T  49169487 tattgtaacgcctcggattttggtccaagacattacgcctaaat 49169530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 48652966 - 48653004
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaa 87  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  48652966 tgtaacgccctgaattttgatccaagacattactcctaa 48653004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 12910866 - 12910919
Alignment:
Q  48 ttgtaacgccctggattttggtccaagacattactcctaaattattttcctttt 101  Q
    ||||||||||| ||||||| |||||||||||||| ||||| | |||||| ||||    
T  12910866 ttgtaacgccccggattttagtccaagacattacgcctaattcattttcttttt 12910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 537900 - 537800
Alignment:
Q  48 ttgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattc 147  Q
    ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||| ||| |||||||    
T  537900 ttgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatctatattatattc 537804  T
Q  148 tagc 151  Q
    ||||    
T  537803 tagc 537800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 38001864 - 38001805
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38001864 cccaatttgtccctcgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttct 38001805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 4557383 - 4557441
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttc 291  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  4557383 cccaatttgtcccccgtacgcacttcaaacaaaaacttcaaagcatagaccatctcttc 4557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 42862258 - 42862200
Alignment:
Q  234 ccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  42862258 ccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttct 42862200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 6309571 - 6309522
Alignment:
Q  243 cccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  6309571 cccccgtatgcacttcaagcaaaaacttcaaagcatagaccatctcttct 6309522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 30910644 - 30910585
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  30910644 cccaatttgttcctcgtacgcactttaagcaaaaacttcaaagcataaaccatctcttct 30910585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 40691752 - 40691702
Alignment:
Q  242 tcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  40691752 tcccccgtacgcacttcaagcaaaaactttaaagcatagaccatatcttct 40691702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 537706 - 537646
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||||||| ||||||||||    
T  537706 cccaatttcgtcccccgtatgcacttccagcaaaaacttcaaagcatagatcatctcttct 537646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 40691932 - 40691880
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttcctttt 101  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||| ||||    
T  40691932 tgtaacgccccggattttgatccaagacattacgcctaaattattttcatttt 40691880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 42640314 - 42640266
Alignment:
Q  234 ccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagac 282  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  42640314 ccaattcgtccaccgtacgcacttcaagcaaaaacttcaaagcatagac 42640266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 4557232 - 4557315
Alignment:
Q  61 gattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatat 145  Q
    ||||||||||||||||||||| |||||||  ||||  ||||||         |||||||||||||||||||||||||||||||||    
T  4557232 gattttggtccaagacattacgcctaaatctttttt-ttttcttttgaaaaacactactatttatttatttcatcaataatatat 4557315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 38279297 - 38279263
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaa 267  Q
    ||||||||||||||||||| |||||||||||||||    
T  38279297 cccaatttgtcccccgtacgcacttcaagcaaaaa 38279263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 8576 - 8675
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatattct 148  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||||||||| ||| ||||||||    
T  8576 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct---gaaaaacactactatttatttatttcatctatattatattct 8672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 1464 - 1518
Alignment:
Q  49 tgtaacgccctggattttggtccaagacattactcctaaattattttccttttct 103  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  1464 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttct 1518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 1658 - 1718
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||  |||||| |||||||||||||||| ||||| ||||||||||    
T  1658 cccaatttcgtcccccgtatgcacttccagcaaaaacttcaaagtatagatcatctcttct 1718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 1072 - 1013
Alignment:
Q  233 cccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  1072 cccaatttgtcccccgtacacacttcaagaaaaaacttcaaagcatggaccatctcttct 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 318 - 258
Alignment:
Q  233 cccaattt-gtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctcttct 292  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  318 cccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttct 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 513 - 412
Alignment:
Q  47 attgtaacgccctggattttggtccaagacattactcctaaattattttccttttctnnnnnnnnncactactatttatttatttcatcaataatatatt 146  Q
    |||||||||||| ||||||||||||||||||||||  |||| | |||||| ||||||         ||||||||||||||||||||||| ||| ||||||    
T  513 attgtaacgccccggattttggtccaagacattacgtctaactcattttctttttct---gaaaaacactactatttatttatttcatctatattatatt 417  T
Q  147 ctagc 151  Q
    |||||    
T  416 ctagc 412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 32669 - 32723
Alignment:
Q  234 ccaatttgtcccccgtactcacttcaagcaaaaacttcaaagcatagaccatctc 288  Q
    |||||||||||||  ||| ||||||||  ||||||||||||||||||||||||||    
T  32669 ccaatttgtcccctatacgcacttcaacaaaaaacttcaaagcatagaccatctc 32723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 240858 - 240887
Alignment:
Q  113 cactactatttatttatttcatcaataata 142  Q
    ||||||||||||||||||||||||||||||    
T  240858 cactactatttatttatttcatcaataata 240887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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